Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 242 4e-59
seq1 136 4e-27
seq10 93.3 4e-14
>seq2
Length=4288194
Score = 242 bits (268), Expect = 4e-59
Identities = 947/1468 (65%), Gaps = 47/1468 (3%)
Strand=Plus/Minus
Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068
||||| | || || || |||||||||| || |||||||| |||| ||| || | | |
Sbjct 3317366 AGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAG 3317307
Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128
|| | ||| ||| | || || ||| | ||||| ||||| || || || | ||| |
Sbjct 3317306 TAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGAC 3317247
Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGC-TCGAATGTCGTC 153187
|| |||||||| |||||||| || | || |||| |||||| | | || || |
Sbjct 3317246 GCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGC 3317187
Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247
| || || | ||| |||||||| |||| || ||| ||| |||||||||| ||| |
Sbjct 3317186 CG-CAGCGAGTCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAG 3317128
Query 153248 CACTCCT--CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305
| || |||| | ||| ||| || | || |||| | || ||| | ||||
Sbjct 3317127 AATGCCCTGCGACA--CAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCC 3317070
Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365
|| |||| || ||||| | | ||| ||||| ||| ||| || || || ||
Sbjct 3317069 AGCGCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGC 3317010
Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425
| | || || ||| | |||||||||||| || |||||||| |||||||||
Sbjct 3317009 AGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCC 3316950
Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTA 153480
|| | ||| | || ||||| || || | ||||||| |||||| || ||
Sbjct 3316949 TGCACACCCAGACCAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGCCTCGGGCACG--- 3316893
Query 153481 TGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCG 153540
|| |||| || || || || |||||||||||| || |||| | || |
Sbjct 3316892 --GGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACAACCAACTGCGTGACGT 3316835
Query 153541 CCTTAAGTTTCTCGAAATCATAGG--TCATT----TCGTCGACGCGTACGCATCGATTCA 153594
| | || || ||| ||||| | || || | ||||||| ||| | || |
Sbjct 3316834 CGTGCAGCCGCTGGAAGTCATACGACTCGTTGTTATAGTCGACGA--ACG-ACGGA---A 3316781
Query 153595 CGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATC 153653
|| | || |||| || || |||||| ||| || |||| || ||||| ||| |||
Sbjct 3316780 GAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCCGGCGCCGA-GTACTCCACAATC 3316722
Query 153654 TCGGCGCAGAGGTT---GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGA 153710
|| | ||| ||||| ||||| ||| ||||| || | ||| ||||| |||||
Sbjct 3316721 TCCGTGCACAGGTTCGAGCTGCGG---ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGG 3316665
Query 153711 TTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA 153770
||||| ||| ||| |||||||| |||| ||| ||||| |||| || | ||
Sbjct 3316664 TTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATG 3316605
Query 153771 AACCTATG-CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCG 153829
| || ||| | ||| || ||| || ||| |||||||||||||||||
Sbjct 3316604 G-CGTACCACAGCTTCTGGGCCTTGACCTTCTTACGACCACGGCCCTCGCTCTCGTACTT 3316546
Query 153830 CTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGG 153889
||||||||| ||||||||| ||||||||||| || || ||||||| |||| || ||
Sbjct 3316545 CTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGG 3316486
Query 153890 ACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949
|||||||||| |||| ||| || | || || |||||||||||| || | |||
Sbjct 3316485 GCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCA 3316426
Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT 154009
||| ||| | || || || || | |||||| ||| ||| ||| |
Sbjct 3316425 GAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTC 3316366
Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069
|| | | ||| ||||||||||| || || | ||||| | | |||||| ||
Sbjct 3316365 CAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCG 3316306
Query 154070 C---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126
| || || ||||| || |||| ||| || | ||||| ||||| || | ||| ||
Sbjct 3316305 CTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGAT 3316246
Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186
| |||| | | ||||||||||| || | | |||| |||||| | | ||
Sbjct 3316245 GATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTG 3316186
Query 154187 CACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGT 154243
|| || | || ||||| || ||||| ||| || || || ||| || | |||||
Sbjct 3316185 GACATTCAGACCGATGCCACCGGCCGT-CTTGGAGAT--CATGGCACACGTCTTGAGCGT 3316129
Query 154244 CCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTG 154303
||||||||| || ||||| ||||| | | | | | ||| || ||| ||| ||
Sbjct 3316128 GTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTG 3316069
Query 154304 CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT 154363
| | |||| || || ||||| || || ||||| || || | || | |
Sbjct 3316068 AGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGA 3316009
Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423
||| | ||| || |||| || || | ||| || || || || | || ||
Sbjct 3316008 CATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAGATACCAACGGCCAC 3315949
Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCG 154451
||||||| |||||||||||| || |||
Sbjct 3315948 ACGCATGATCATGTGCTGCGGCCGCTCG 3315921
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| || || || | | |||||||| ||||||||||||||| |
Sbjct 329130 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 329071
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || | || || || | | | || || ||||| ||||| || ||
Sbjct 329070 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGG 329011
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | ||||| | |||||| |||
Sbjct 329010 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACC 328951
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| | ||| | ||| || || |||| || || ||||| || ||||||
Sbjct 328950 TCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||||| || | || | | |||||||| || ||||||||||||
Sbjct 329359 GCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 329300
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||| || | || || || | | | || || ||||| ||||| || ||
Sbjct 329299 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329240
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | | || | |||||| | || |||||
Sbjct 329239 AATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCAC 329180
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | ||| || || ||||| || || || |||||||||||
Sbjct 329179 TTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
>seq1
Length=5014741
Score = 136 bits (150), Expect = 4e-27
Identities = 352/528 (67%), Gaps = 35/528 (7%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383
|| || ||| | ||||| ||||| ||||||| || ||||| ||||| |
Sbjct 1638351 GTCCCCTGCATCCGCAAGAAGGCCGAGTGGGCCCTGCGCTGGATTTC---CGACAAGGAG 1638407
Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
|||| | || ||||| | ||||| || || ||||||||| | || || ||||
Sbjct 1638408 TCCACCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGC 1638467
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
||| | ||||||| | | || | | ||| | ||||| || ||||| ||| |
Sbjct 1638468 GCCTTCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCC 1638527
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTAC 52556
|| ||| |||| || |||||||| || |||||||| |||||||| ||||| || |
Sbjct 1638528 AATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTCC 1638587
Query 52557 TAC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613
|| || | ||| |||| || ||| |||| | ||| ||
Sbjct 1638588 CACCTGAACAACCGC----CCGAGCAAGCAGATC--------ATCCAGGACATTATCGTC 1638635
Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673
|| || || || || |||||||||| || | || ||||| | || ||||||
Sbjct 1638636 GATGCCGTCAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCCCTGTGCTCTTCTGGGC 1638695
Query 52674 ATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
|||||||| || | |||| ||||||| ||||| || || || |||||| ||||
Sbjct 1638696 ATGAACGC-CACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCGC 1638754
Query 52733 GCTCGGGCA-GCCAAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACAT 52789
||||| | | ||| || || | ||||| |||||| ||||| |||||| | |||||
Sbjct 1638755 TCTCGGCAACGACAAGGT-CTAC--CGCTCCACCAATCCCTTTGACTTTATGGAGAACAT 1638811
Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| || | |||||||||||||| ||||||||||| |||||||| ||
Sbjct 1638812 CTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1638859
>seq10
Length=919426
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| || || || |||||| || || || || | |
Sbjct 645279 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAA 645220
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541
||| || ||||| ||||| || || || || || ||||| ||| || || | |||
Sbjct 645219 GATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 645160
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
|| | | |||||||| |||||||||||| | || | || || || || || || || |
Sbjct 645159 GT-CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 645101
Query 138602 CAAAAATCTGCATGG 138616
| || ||||||||||
Sbjct 645100 CGAAGATCTGCATGG 645086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262238714720
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