Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 242 4e-59 seq1 136 4e-27 seq10 93.3 4e-14 >seq2 Length=4288194 Score = 242 bits (268), Expect = 4e-59 Identities = 947/1468 (65%), Gaps = 47/1468 (3%) Strand=Plus/Minus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || |||||||||| || |||||||| |||| ||| || | | | Sbjct 3317366 AGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAG 3317307 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||| ||| | || || ||| | ||||| ||||| || || || | ||| | Sbjct 3317306 TAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGAC 3317247 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGC-TCGAATGTCGTC 153187 || |||||||| |||||||| || | || |||| |||||| | | || || | Sbjct 3317246 GCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGC 3317187 Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247 | || || | ||| |||||||| |||| || ||| ||| |||||||||| ||| | Sbjct 3317186 CG-CAGCGAGTCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAG 3317128 Query 153248 CACTCCT--CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCC 153305 | || |||| | ||| ||| || | || |||| | || ||| | |||| Sbjct 3317127 AATGCCCTGCGACA--CAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCC 3317070 Query 153306 AGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA 153365 || |||| || ||||| | | ||| ||||| ||| ||| || || || || Sbjct 3317069 AGCGCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGC 3317010 Query 153366 ACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCC 153425 | | || || ||| | |||||||||||| || |||||||| ||||||||| Sbjct 3317009 AGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCC 3316950 Query 153426 TGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGC-----GCCTCGCGCTCGCTA 153480 || | ||| | || ||||| || || | ||||||| |||||| || || Sbjct 3316949 TGCACACCCAGACCAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGCCTCGGGCACG--- 3316893 Query 153481 TGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCG 153540 || |||| || || || || |||||||||||| || |||| | || | Sbjct 3316892 --GGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACAACCAACTGCGTGACGT 3316835 Query 153541 CCTTAAGTTTCTCGAAATCATAGG--TCATT----TCGTCGACGCGTACGCATCGATTCA 153594 | | || || ||| ||||| | || || | ||||||| ||| | || | Sbjct 3316834 CGTGCAGCCGCTGGAAGTCATACGACTCGTTGTTATAGTCGACGA--ACG-ACGGA---A 3316781 Query 153595 CGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATC 153653 || | || |||| || || |||||| ||| || |||| || ||||| ||| ||| Sbjct 3316780 GAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCCGGCGCCGA-GTACTCCACAATC 3316722 Query 153654 TCGGCGCAGAGGTT---GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGA 153710 || | ||| ||||| ||||| ||| ||||| || | ||| ||||| ||||| Sbjct 3316721 TCCGTGCACAGGTTCGAGCTGCGG---ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGG 3316665 Query 153711 TTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA 153770 ||||| ||| ||| |||||||| |||| ||| ||||| |||| || | || Sbjct 3316664 TTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATG 3316605 Query 153771 AACCTATG-CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCG 153829 | || ||| | ||| || ||| || ||| ||||||||||||||||| Sbjct 3316604 G-CGTACCACAGCTTCTGGGCCTTGACCTTCTTACGACCACGGCCCTCGCTCTCGTACTT 3316546 Query 153830 CTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGG 153889 ||||||||| ||||||||| ||||||||||| || || ||||||| |||| || || Sbjct 3316545 CTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGG 3316486 Query 153890 ACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCA 153949 |||||||||| |||| ||| || | || || |||||||||||| || | ||| Sbjct 3316485 GCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCA 3316426 Query 153950 GAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATT 154009 ||| ||| | || || || || | |||||| ||| ||| ||| | Sbjct 3316425 GAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTC 3316366 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | | ||| ||||||||||| || || | ||||| | | |||||| || Sbjct 3316365 CAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCG 3316306 Query 154070 C---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 | || || ||||| || |||| ||| || | ||||| ||||| || | ||| || Sbjct 3316305 CTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGAT 3316246 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186 | |||| | | ||||||||||| || | | |||| |||||| | | || Sbjct 3316245 GATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTG 3316186 Query 154187 CACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCC--CAGCGT 154243 || || | || ||||| || ||||| ||| || || || ||| || | ||||| Sbjct 3316185 GACATTCAGACCGATGCCACCGGCCGT-CTTGGAGAT--CATGGCACACGTCTTGAGCGT 3316129 Query 154244 CCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTG 154303 ||||||||| || ||||| ||||| | | | | | ||| || ||| ||| || Sbjct 3316128 GTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTG 3316069 Query 154304 CGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT 154363 | | |||| || || ||||| || || ||||| || || | || | | Sbjct 3316068 AGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGA 3316009 Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||| | ||| || |||| || || | ||| || || || || | || || Sbjct 3316008 CATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAGATACCAACGGCCAC 3315949 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCG 154451 ||||||| |||||||||||| || ||| Sbjct 3315948 ACGCATGATCATGTGCTGCGGCCGCTCG 3315921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | |||||||| ||||||||||||||| | Sbjct 329130 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 329071 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | || || || | | | || || ||||| ||||| || || Sbjct 329070 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGG 329011 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||| | |||||| ||| Sbjct 329010 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACC 328951 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | ||| | ||| || || |||| || || ||||| || |||||| Sbjct 328950 TCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || | || | | |||||||| || |||||||||||| Sbjct 329359 GCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 329300 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || | || || || | | | || || ||||| ||||| || || Sbjct 329299 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329240 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | || ||||| Sbjct 329239 AATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCAC 329180 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || ||||| || || || ||||||||||| Sbjct 329179 TTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 >seq1 Length=5014741 Score = 136 bits (150), Expect = 4e-27 Identities = 352/528 (67%), Gaps = 35/528 (7%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| | ||||| ||||| ||||||| || ||||| ||||| | Sbjct 1638351 GTCCCCTGCATCCGCAAGAAGGCCGAGTGGGCCCTGCGCTGGATTTC---CGACAAGGAG 1638407 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 |||| | || ||||| | ||||| || || ||||||||| | || || |||| Sbjct 1638408 TCCACCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGC 1638467 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||| | ||||||| | | || | | ||| | ||||| || ||||| ||| | Sbjct 1638468 GCCTTCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCC 1638527 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT------CTAC 52556 || ||| |||| || |||||||| || |||||||| |||||||| ||||| || | Sbjct 1638528 AATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTCC 1638587 Query 52557 TAC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613 || || | ||| |||| || ||| |||| | ||| || Sbjct 1638588 CACCTGAACAACCGC----CCGAGCAAGCAGATC--------ATCCAGGACATTATCGTC 1638635 Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || || || |||||||||| || | || ||||| | || |||||| Sbjct 1638636 GATGCCGTCAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCCCTGTGCTCTTCTGGGC 1638695 Query 52674 ATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 |||||||| || | |||| ||||||| ||||| || || || |||||| |||| Sbjct 1638696 ATGAACGC-CACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCGC 1638754 Query 52733 GCTCGGGCA-GCCAAAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACAT 52789 ||||| | | ||| || || | ||||| |||||| ||||| |||||| | ||||| Sbjct 1638755 TCTCGGCAACGACAAGGT-CTAC--CGCTCCACCAATCCCTTTGACTTTATGGAGAACAT 1638811 Query 52790 TTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || | |||||||||||||| ||||||||||| |||||||| || Sbjct 1638812 CTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1638859 >seq10 Length=919426 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| || || || |||||| || || || || | | Sbjct 645279 CTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAA 645220 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || || || || ||||| ||| || || | ||| Sbjct 645219 GATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 645160 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 || | | |||||||| |||||||||||| | || | || || || || || || || | Sbjct 645159 GT-CGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 645101 Query 138602 CAAAAATCTGCATGG 138616 | || |||||||||| Sbjct 645100 CGAAGATCTGCATGG 645086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262238714720