Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 168 6e-37
seq1 132 5e-26
seq3 111 1e-19
seq10 104 2e-17
>seq2
Length=4288194
Score = 168 bits (186), Expect = 6e-37
Identities = 507/763 (66%), Gaps = 41/763 (5%)
Strand=Plus/Minus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || ||| |||||| || || ||||||||||||| ||||||||||| || ||
Sbjct 3317376 CATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCAC 3317317
Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153
|||| | || | |||| ||| | |||||||| |||||||||| || || |||||
Sbjct 3317316 ACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 3317257
Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212
|| ||||| || || ||||| ||||||||||| | ||| | ||| ||||| || ||
Sbjct 3317256 CGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTT 3317197
Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272
| ||||| ||| || | ||| | ||||| | |||| ||| | | |
Sbjct 3317196 G-ATCTTCAGCCGCAGCGAGTCCCAGTCCCACA---GGTCCGAGGGCGTCACGTCCCACA 3317141
Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGG-GGGCTATTCTCGTACGATTCATAAGGAC 146329
||||| |||| | |||| ||| ||||| | || ||| || | || || | ||
Sbjct 3317140 TGTCGGGCTGCAGAATGCCCTGCGACACAGGAGAGC---CCTCATATGTTTGGTAGGTAC 3317084
Query 146330 CGTCGATCTTGGCCAGTTCGCAGCTAGCTTC--CAGAGCCGAAAAGTATATGGTCTCCGC 146387
| |||||||||||||| |||| | | || | ||| |||| ||| ||||||||
Sbjct 3317083 CCTCGATCTTGGCCAGCGCGCA-CGA-CTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAA 3317026
Query 146388 GATCATGTAGTTGACGCTCCTGGCCT-CCTCG---CTGTCGTAGGGGATATCGAGAAGCA 146443
|||| | ||| | | ||| | ||||| || |||| || || ||
Sbjct 3317025 GATCTGCTTGTT----CAGCAGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCA 3316970
Query 146444 CAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTG- 146502
|||||||| || |||||||| | || | ||||| ||| ||||| | |||| |||
Sbjct 3316969 GGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGGCCGGTGGCGCATGTTGCTGT 3316910
Query 146503 TTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562
|||| | | ||| ||| |||| ||| ||| ||||| |||||| || || ||
Sbjct 3316909 TTCGTGCCTCGGGCA-CGGGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACA 3316851
Query 146563 ACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACG 146622
|| | | ||| | | |||| | ||||| | | | | ||| || ||||
Sbjct 3316850 ACCAACTGCGTGACGTCGTGCAGCCGCTGGAAGTCATACGACTCGTTGTTATAGTCGACG 3316791
Query 146623 CACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGC--AAT 146680
|| | || | ||||||||||| || ||||| ||||||| | ||| | |
Sbjct 3316790 AACGACGGAAGAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCC--GGCGCCGAGT 3316733
Query 146681 ACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAtttttttGGT 146737
||| ||||||||| | ||| ||||| ||||| |||| |||||| || || ||||
Sbjct 3316732 ACTCCACAATCTCCGTGCACAGGTTCGAGCTGC---GGATGGTGCCCAGGTTCTTCTGGT 3316676
Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777
| || ||| ||||||| ||||||||||||||||| ||||
Sbjct 3316675 TGCT---CTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAACGG 3316636
Score = 109 bits (120), Expect = 5e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||| ||| | ||||| || || ||||| || |||
Sbjct 328416 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCA 328357
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| ||||| || ||||||||||||||| ||| || ||||
Sbjct 328356 GCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 328297
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| ||||| | | ||| |||| | |||||| || | || | || |||||||| || ||
Sbjct 328296 ACGTTGT-CAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGCGT 328238
Query 127096 TTTTACAAAAATCTGCATG 127114
|| || ||||||||||||
Sbjct 328237 CTTGACGAAAATCTGCATG 328219
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| || | || ||||| || || || ||||| ||| || ||| ||
Sbjct 329346 CGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCG 329287
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || | ||| || || || | |||| |||||||| || || || ||||||||||||
Sbjct 329286 TCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTG 329227
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| ||| ||||| ||||| | | |||||||| || ||||| | || |
Sbjct 329226 TCCTGGATCTTCGACTTGACGTTGT-CAATGGTGTCCGAGGATTCCACTTCCAGCGTAAT 329168
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| ||||| ||||| || || || |||||||||||
Sbjct 329167 CGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| || | ||||||||| || || || ||||| ||
Sbjct 328674 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328615
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||||| |||||||| || || ||
Sbjct 328614 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGA 328555
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || || ||||| | |||| ||||| | ||||||
Sbjct 328554 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACC 328495
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || |||||||| || || || || || ||||||||
Sbjct 328494 TCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||| || | ||| ||||| || ||||| ||||| ||| |
Sbjct 329130 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 329071
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || || || | ||| || || || | |||| |||||||| || || ||
Sbjct 329070 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGG 329011
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| ||| || ||||| |||| || | ||||||| ||| ||
Sbjct 329010 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTG-TCAATCGTGTCCGACGACTCAAC 328952
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | ||| ||||| |||| || || ||||| || ||||||
Sbjct 328951 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| || | ||||||||| || || || ||||| ||
Sbjct 328902 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328843
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||||| |||||||| || || ||
Sbjct 328842 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 328783
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| ||| || ||||| |||| || | ||||||| ||| ||
Sbjct 328782 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTG-TCAATCGTGTCCGACGACTCAAC 328724
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | ||| ||||| |||| || || ||||| || ||||||
Sbjct 328723 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328675
>seq1
Length=5014741
Score = 132 bits (146), Expect = 5e-26
Identities = 247/360 (69%), Gaps = 11/360 (3%)
Strand=Plus/Plus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
||||| || || || || ||| ||||| || || | ||||| |||||||||||| ||
Sbjct 1638507 ATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGAC 1638566
Query 47283 TTTGCCTGTCTC---TACTACAACACTAGAGTCGATCAAAAGTTGGA-CGTGCCCACCGT 47338
|||||||| || | || | || || || ||| | || | || | | |
Sbjct 1638567 TTTGCCTGCCTGCTGTTCTCCCAC-CT------GAACAACCGCCCGAGCAAGCAGATCAT 1638619
Query 47339 CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCC 47398
| ||||| | | ||| |||||| |||||| ||||||||| ||||||| |||||
Sbjct 1638620 CCAGGACATTATCGTCGATGCCGTCAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCC 1638679
Query 47399 CGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGA 47458
| || | |||| |||||||| | |||| ||||||| || || || |||||
Sbjct 1638680 CTGTGCTCTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGA 1638739
Query 47459 CCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518
||| ||||| || || | |||| | |||| | || ||||| || || ||
Sbjct 1638740 CCGTCTGCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTT 1638799
Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| | ||||| || || | |||||||||||||| |||||||||||||||||||| ||
Sbjct 1638800 TATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1638859
>seq3
Length=3655701
Score = 111 bits (122), Expect = 1e-19
Identities = 163/227 (72%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 2673564 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2673623
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || ||| || ||||| || || || |||||| |||||||| || || ||
Sbjct 2673624 AGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 2673683
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||||| ||||||
Sbjct 2673684 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG-TCGATGGTGTCCGAGGACTCGAC 2673742
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112
|||| ||| | || ||||| || || || || || ||| |||||
Sbjct 2673743 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787
>seq10
Length=919426
Score = 104 bits (114), Expect = 2e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| ||||| || | ||| ||| || || || ||||| |||
Sbjct 645317 GCGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 645258
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || || || ||||| || || ||| |||||| |||||||| || ||
Sbjct 645257 GACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGG 645198
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||||| | |||| |||||| | |||
Sbjct 645197 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCC 645138
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|| || | ||| | || ||||| || || || || || || ||||||||||
Sbjct 645137 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGG 645086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500645462240
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