Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 168 6e-37 seq1 132 5e-26 seq3 111 1e-19 seq10 104 2e-17 >seq2 Length=4288194 Score = 168 bits (186), Expect = 6e-37 Identities = 507/763 (66%), Gaps = 41/763 (5%) Strand=Plus/Minus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||||| || || ||||||||||||| ||||||||||| || || Sbjct 3317376 CATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCAC 3317317 Query 146094 GCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTG 146153 |||| | || | |||| ||| | |||||||| |||||||||| || || ||||| Sbjct 3317316 ACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 3317257 Query 146154 CGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTT 146212 || ||||| || || ||||| ||||||||||| | ||| | ||| ||||| || || Sbjct 3317256 CGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTT 3317197 Query 146213 GAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGT 146272 | ||||| ||| || | ||| | ||||| | |||| ||| | | | Sbjct 3317196 G-ATCTTCAGCCGCAGCGAGTCCCAGTCCCACA---GGTCCGAGGGCGTCACGTCCCACA 3317141 Query 146273 TGTCGTAATGCATAGTGCC--GCGGAACAGG-GGGCTATTCTCGTACGATTCATAAGGAC 146329 ||||| |||| | |||| ||| ||||| | || ||| || | || || | || Sbjct 3317140 TGTCGGGCTGCAGAATGCCCTGCGACACAGGAGAGC---CCTCATATGTTTGGTAGGTAC 3317084 Query 146330 CGTCGATCTTGGCCAGTTCGCAGCTAGCTTC--CAGAGCCGAAAAGTATATGGTCTCCGC 146387 | |||||||||||||| |||| | | || | ||| |||| ||| |||||||| Sbjct 3317083 CCTCGATCTTGGCCAGCGCGCA-CGA-CTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAA 3317026 Query 146388 GATCATGTAGTTGACGCTCCTGGCCT-CCTCG---CTGTCGTAGGGGATATCGAGAAGCA 146443 |||| | ||| | | ||| | ||||| || |||| || || || Sbjct 3317025 GATCTGCTTGTT----CAGCAGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCA 3316970 Query 146444 CAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTG- 146502 |||||||| || |||||||| | || | ||||| ||| ||||| | |||| ||| Sbjct 3316969 GGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGGCCGGTGGCGCATGTTGCTGT 3316910 Query 146503 TTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562 |||| | | ||| ||| |||| ||| ||| ||||| |||||| || || || Sbjct 3316909 TTCGTGCCTCGGGCA-CGGGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACA 3316851 Query 146563 ACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACG 146622 || | | ||| | | |||| | ||||| | | | | ||| || |||| Sbjct 3316850 ACCAACTGCGTGACGTCGTGCAGCCGCTGGAAGTCATACGACTCGTTGTTATAGTCGACG 3316791 Query 146623 CACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGC--AAT 146680 || | || | ||||||||||| || ||||| ||||||| | ||| | | Sbjct 3316790 AACGACGGAAGAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCC--GGCGCCGAGT 3316733 Query 146681 ACTGCACAATCTCGGCGCAGAGGTT---GCTGCACTTGATGATGCCCAAAtttttttGGT 146737 ||| ||||||||| | ||| ||||| ||||| |||| |||||| || || |||| Sbjct 3316732 ACTCCACAATCTCCGTGCACAGGTTCGAGCTGC---GGATGGTGCCCAGGTTCTTCTGGT 3316676 Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 | || ||| ||||||| ||||||||||||||||| |||| Sbjct 3316675 TGCT---CTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAACGG 3316636 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | ||||| || || ||||| || ||| Sbjct 328416 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCA 328357 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 328356 GCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 328297 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||| |||| | |||||| || | || | || |||||||| || || Sbjct 328296 ACGTTGT-CAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGCGT 328238 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 328237 CTTGACGAAAATCTGCATG 328219 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| || ||| || Sbjct 329346 CGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCG 329287 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || || || | |||| |||||||| || || || |||||||||||| Sbjct 329286 TCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTG 329227 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| ||||| | | |||||||| || ||||| | || | Sbjct 329226 TCCTGGATCTTCGACTTGACGTTGT-CAATGGTGTCCGAGGATTCCACTTCCAGCGTAAT 329168 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| ||||| || || || ||||||||||| Sbjct 329167 CGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| || | ||||||||| || || || ||||| || Sbjct 328674 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328615 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 328614 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGA 328555 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| ||||| | |||||| Sbjct 328554 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACC 328495 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||| || || || || || |||||||| Sbjct 328494 TCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | ||| ||||| || ||||| ||||| ||| | Sbjct 329130 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 329071 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || | ||| || || || | |||| |||||||| || || || Sbjct 329070 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGG 329011 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| |||| || | ||||||| ||| || Sbjct 329010 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTG-TCAATCGTGTCCGACGACTCAAC 328952 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||| || || ||||| || |||||| Sbjct 328951 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| || | ||||||||| || || || ||||| || Sbjct 328902 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328843 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 328842 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 328783 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||| |||| || | ||||||| ||| || Sbjct 328782 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTG-TCAATCGTGTCCGACGACTCAAC 328724 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| |||| || || ||||| || |||||| Sbjct 328723 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328675 >seq1 Length=5014741 Score = 132 bits (146), Expect = 5e-26 Identities = 247/360 (69%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 ||||| || || || || ||| ||||| || || | ||||| |||||||||||| || Sbjct 1638507 ATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGAC 1638566 Query 47283 TTTGCCTGTCTC---TACTACAACACTAGAGTCGATCAAAAGTTGGA-CGTGCCCACCGT 47338 |||||||| || | || | || || || ||| | || | || | | | Sbjct 1638567 TTTGCCTGCCTGCTGTTCTCCCAC-CT------GAACAACCGCCCGAGCAAGCAGATCAT 1638619 Query 47339 CAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCC 47398 | ||||| | | ||| |||||| |||||| ||||||||| ||||||| ||||| Sbjct 1638620 CCAGGACATTATCGTCGATGCCGTCAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCC 1638679 Query 47399 CGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGA 47458 | || | |||| |||||||| | |||| ||||||| || || || ||||| Sbjct 1638680 CTGTGCTCTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGA 1638739 Query 47459 CCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518 ||| ||||| || || | |||| | |||| | || ||||| || || || Sbjct 1638740 CCGTCTGCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTT 1638799 Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| | ||||| || || | |||||||||||||| |||||||||||||||||||| || Sbjct 1638800 TATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1638859 >seq3 Length=3655701 Score = 111 bits (122), Expect = 1e-19 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 2673564 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2673623 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || || |||||| |||||||| || || || Sbjct 2673624 AGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 2673683 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| |||||| Sbjct 2673684 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG-TCGATGGTGTCCGAGGACTCGAC 2673742 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 |||| ||| | || ||||| || || || || || ||| ||||| Sbjct 2673743 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787 >seq10 Length=919426 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| ||||| || | ||| ||| || || || ||||| ||| Sbjct 645317 GCGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCG 645258 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || || || ||||| || || ||| |||||| |||||||| || || Sbjct 645257 GACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGG 645198 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | ||| Sbjct 645197 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCC 645138 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || || | ||| | || ||||| || || || || || || |||||||||| Sbjct 645137 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGG 645086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500645462240