Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 156 5e-33 >seq2 Length=4288194 Score = 156 bits (172), Expect = 5e-33 Identities = 1063/1684 (63%), Gaps = 49/1684 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| ||| |||||||| | | ||||| | Sbjct 3317651 CGCAGGTAGTACATGCCCGTCTTGAGGCCCAGCTTCCAGCCCGTGAAGTGCATGCTTGTG 3317592 Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | || || || | |||| || ||||| || || || ||||| || Sbjct 3317591 ATCTTGCCCATGGTCGG-CTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAA 3317533 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 115733 | || || || || ||||| | |||| | || || ||| |||||||| || Sbjct 3317532 GGCACCACGGTCTGCAGCCATCTG---CACAATCGTCCGCTGCGAGATCTCCCACACCGT 3317476 Query 115734 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793 |||| ||| ||| || || | ||||| | || || ||||| || || | Sbjct 3317475 CTTGTACAGGGCCTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTC 3317416 Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 | | ||| | | |||||| | | ||||| ||||| || | || |||| | Sbjct 3317415 CGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAG 3317356 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 || | ||||| || ||||| || || || || | | |||||||||| Sbjct 3317355 CAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGA 3317296 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 |||||||||||| |||||||| ||||| |||| || || | || || || || ||||| Sbjct 3317295 CGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCAT 3317236 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC--CTTGAGGGCG 116031 || |||| || || |||||||| | ||| | || | || ||| | || | | Sbjct 3317235 CGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGAT--CTTCAGCCGCAGCGAG 3317178 Query 116032 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 |||||||| | | | | | | | |||||||| || ||| || || || || Sbjct 3317177 TCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGC 3317118 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151 ||| | || || |||||| |||| | || | ||||| | || |||| || | | Sbjct 3317117 GACACAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGAC 3317058 Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTC 116210 || || || ||||| || || ||||| || || | |||| | | | ||||| Sbjct 3317057 TCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGT-GCCTC 3316999 Query 116211 GTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 116270 | || ||||| | | || | | || | || || ||||| || ||||| || Sbjct 3316998 GGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAG 3316939 Query 116271 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATT 116327 ||||| || || || | ||| || ||||| || ||| |||||| || | || Sbjct 3316938 ACCAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC---CTCGGGCACGGGGTAGTAGTT 3316882 Query 116328 CCTATCGATAACCCTATTTAGATTTTTGGTGACAAC---CTTTGTGATTTCATGAAGCTT 116384 | || || | | || || ||| |||||| || |||| || || ||| Sbjct 3316881 CACGTCAATGATGCGGTTGAG---GTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCG 3316825 Query 116385 TTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 116442 | | | ||| | ||| || | | | | ||| || ||||| || | || ||| Sbjct 3316824 CTGGAAGTCATACGACT-CG-TTGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCC 3316767 Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 116502 | || ||||| | ||| ||| | | |||||| | ||| ||||| |||| || Sbjct 3316766 AAGTTGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTC 3316707 Query 116503 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAG 116562 || || |||||||||| |||||| || || ||| ||| || ||||||||| Sbjct 3316706 GAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAG 3316647 Query 116563 AGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGC 116621 ||||| | || | ||||||||||| || | || ||||| || | ||| | | || | Sbjct 3316646 AGCATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGG 3316587 Query 116622 GGCTGGCACAGTGGCGTTGG--CTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCA 116679 | || | || | | | | | || ||||| ||||||||| ||| || |||||| Sbjct 3316586 GCCTTG-ACCTT--CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCA 3316530 Query 116680 AACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGC-CTTATCTGGACAGAAGAGAGACC 116737 ||||| || || ||| || | || || || || || || || || | || | || Sbjct 3316529 AACTCCTC-GCCGTAGCAATCCGCCAGGCC-GGCGCACTCATTGGGGCACATCAGCGTCC 3316472 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | || ||| || ||||||||||| || || ||||||||||| || ||| | Sbjct 3316471 ACTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAA 3316412 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 |||| || || | || || | ||||| || |||| |||| || || | || Sbjct 3316411 GATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGA 3316352 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCT 116914 ||| ||||||||||| |||| ||| | || | || ||| ||| ||| Sbjct 3316351 CATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCT 3316292 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| || || | ||||| |||||| || |||||||| || ||||| || | ||| Sbjct 3316291 GGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATG 3316232 Query 116975 GGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 ||| || || || || || ||| | | |||| | | ||||| | || ||| Sbjct 3316231 TGCCGTTGGTGCCGGCAATGTAGGAGCC--GGTGGCGCGAATGCGGTGGACATTCAGACC 3316174 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 || || || ||| ||| ||||| || ||| | |||| || ||||||| || || Sbjct 3316173 GATGCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTC 3316114 Query 117093 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACC 117152 || ||| |||| | | | |||||||||| |||| || | | || || || Sbjct 3316113 AATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCC 3316054 Query 117153 AGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGG 117211 ||||||||||| || || | ||||| |||| | || | | |||||| | | ||| | Sbjct 3316053 GGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTATG 3315995 Query 117212 TCTC 117215 |||| Sbjct 3315994 TCTC 3315991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507000610160