Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 192 9e-44 >seq2 Length=4288194 Score = 192 bits (212), Expect = 9e-44 Identities = 397/580 (68%), Gaps = 8/580 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| ||||||||||| |||| | |||||| ||||| | | ||| |||||||||| Sbjct 3317694 CTGGTCGACCGTGAACTGGATGGGCTGTGCGGCAG-CCTGCGTGCGCAGGTAGTACATGC 3317636 Query 203898 CGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 | ||||| |||||| || ||| ||||| | ||||||| | | |||| || | | Sbjct 3317635 CCGTCTTGAGGCCCAGCTTCCAGCCCGTGAA-GTGCATGCTTGTGATCTTGCCCATGGTC 3317577 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||| |||||||| ||||| |||||||| |||||| || || ||||| Sbjct 3317576 GGCTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGAT-AAAGGCACCACGGTCTGC 3317518 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 ||||| | | ||| ||| |||||| |||||||||||||||||| ||| | | || | Sbjct 3317517 AGCCATCTGCACAATCGTCCGCTGCGAGATCTCCCACACCGTCTTGTACAGGGCCTTGAT 3317458 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 || || | | | | || || |||||| ||||| || || || | | || Sbjct 3317457 GTCGGCCGGGATGT-TGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCGGTTCT 3317399 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | ||| ||||| |||| || ||| ||| | ||| ||||||| | Sbjct 3317398 TCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCA 3317339 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 ||| || || |||| |||||| | || | | | | |||| ||| |||| ||||| Sbjct 3317338 CCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGC 3317279 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 |||||||||||| | |||||| | || ||||| ||||| || |||| ||||| Sbjct 3317278 ACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGAC 3317219 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCAC 204374 |||||||||||||| | | || | | || ||| ||| |||||| || | Sbjct 3317218 TGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCCG 3317159 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 ||| ||||| ||||||||||| ||| | ||||| || Sbjct 3317158 AGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTG 3317119 Score = 170 bits (188), Expect = 3e-37 Identities = 568/867 (66%), Gaps = 24/867 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTC--ACCACCCCCACATGCTGCTGGTTA 204940 |||||| ||||| ||||||| ||| || || | | |||| | || |||||| Sbjct 3316731 CTCCACAATCTCCGTGCACAGGTT--CGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 3316674 Query 204941 GACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGAT 205000 ||||||||| ||| ||||||||| | ||||||||| | || ||||| |||| | Sbjct 3316673 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGCC 3316614 Query 205001 CGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACAT--CCCTTGAG 205058 ||||||| | ||||| | | |||| || | ||| ||| || |||| | Sbjct 3316613 TCCAGAATGGCGTACCACAGCTTCTGGGCCTTGACCTTCTT-ACGACCACGGCCCTCGCT 3316555 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118 |||||| || |||||||||| |||| || ||||| ||| ||| || | | Sbjct 3316554 -CTCGTACTTCTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCCGGCGC 3316496 Query 205119 ATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGG 205177 | | ||||| |||||||| | |||| | | | |||| ||| | || ||| ||||| Sbjct 3316495 ACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTC-CACACGCTTCATGAACAGA 3316437 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 ||| |||||| || || || ||||||||||| | | | || | || ||||| Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGGCC 205294 || || |||||| | | ||| | ||||||||||||||||| || | | | Sbjct 3316376 TTCCGCAGGTCCAGGAA---CTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATGCAG 3316320 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || | |||||| |||||||||||||| ||| | | | ||| || || Sbjct 3316319 AAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACA 3316260 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 || ||||| || | | ||||||| || ||||| |||| | ||| ||||| Sbjct 3316259 CGAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTG 3316200 Query 205415 GCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472 || | | || |||| || | || || || || | ||||| |||| ||| | Sbjct 3316199 GCGCGAATGCGGTGGACAT--TCAGACCGATGCCACCGGCCGTCTTGGAGATCATGGCAC 3316142 Query 205473 AC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT-CACCAGATA 205530 || ||||| || ||| ||||||||| | ||| |||||| || ||| ||| || | Sbjct 3316141 ACGTCTTG-AGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCA-TGTCCACGAGGAA 3316084 Query 205531 GCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCT 205590 ||| |||| ||||| || | ||||| |||| ||||||||| || |||||| | Sbjct 3316083 GCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGT 3316024 Query 205591 GAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTG 205650 |||| ||| | | || | |||| ||||| | |||| ||||| |||| || Sbjct 3316023 GAAGAACTTGTTGGACATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCA 3315964 Query 205651 AATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCAC 205710 ||||| | ||| | | ||||| | ||| || || | ||| | | | | ||| | Sbjct 3315963 GATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGTCGAG 3315904 Query 205711 CTTGAGCAGATAGGCTCTCTCTAGGGT 205737 |||||| || |||| | ||| ||||| Sbjct 3315903 CTTGAGGAGGTAGGAGCGCTCCAGGGT 3315877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154941574560