Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 192 9e-44
>seq2
Length=4288194
Score = 192 bits (212), Expect = 9e-44
Identities = 397/580 (68%), Gaps = 8/580 (1%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897
|| ||| ||||||||||| |||| | |||||| ||||| | | ||| ||||||||||
Sbjct 3317694 CTGGTCGACCGTGAACTGGATGGGCTGTGCGGCAG-CCTGCGTGCGCAGGTAGTACATGC 3317636
Query 203898 CGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
| ||||| |||||| || ||| ||||| | ||||||| | | |||| || | |
Sbjct 3317635 CCGTCTTGAGGCCCAGCTTCCAGCCCGTGAA-GTGCATGCTTGTGATCTTGCCCATGGTC 3317577
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015
|| || |||||| |||||||| ||||| |||||||| |||||| || || |||||
Sbjct 3317576 GGCTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGAT-AAAGGCACCACGGTCTGC 3317518
Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075
||||| | | ||| ||| |||||| |||||||||||||||||| ||| | | || |
Sbjct 3317517 AGCCATCTGCACAATCGTCCGCTGCGAGATCTCCCACACCGTCTTGTACAGGGCCTTGAT 3317458
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134
|| || | | | | || || |||||| ||||| || || || | | ||
Sbjct 3317457 GTCGGCCGGGATGT-TGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCGGTTCT 3317399
Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194
|| | | ||| ||||| |||| || ||| ||| | ||| ||||||| |
Sbjct 3317398 TCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCA 3317339
Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254
||| || || |||| |||||| | || | | | | |||| ||| |||| |||||
Sbjct 3317338 CCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGC 3317279
Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314
|||||||||||| | |||||| | || ||||| ||||| || |||| |||||
Sbjct 3317278 ACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGAC 3317219
Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCAC 204374
|||||||||||||| | | || | | || ||| ||| |||||| || |
Sbjct 3317218 TGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCCG 3317159
Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414
||| ||||| ||||||||||| ||| | ||||| ||
Sbjct 3317158 AGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTG 3317119
Score = 170 bits (188), Expect = 3e-37
Identities = 568/867 (66%), Gaps = 24/867 (3%)
Strand=Plus/Minus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTC--ACCACCCCCACATGCTGCTGGTTA 204940
|||||| ||||| ||||||| ||| || || | | |||| | || ||||||
Sbjct 3316731 CTCCACAATCTCCGTGCACAGGTT--CGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 3316674
Query 204941 GACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGAT 205000
||||||||| ||| ||||||||| | ||||||||| | || ||||| |||| |
Sbjct 3316673 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGCC 3316614
Query 205001 CGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACAT--CCCTTGAG 205058
||||||| | ||||| | | |||| || | ||| ||| || |||| |
Sbjct 3316613 TCCAGAATGGCGTACCACAGCTTCTGGGCCTTGACCTTCTT-ACGACCACGGCCCTCGCT 3316555
Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGAC 205118
|||||| || |||||||||| |||| || ||||| ||| ||| || | |
Sbjct 3316554 -CTCGTACTTCTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCCGGCGC 3316496
Query 205119 ATTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGG 205177
| | ||||| |||||||| | |||| | | | |||| ||| | || ||| |||||
Sbjct 3316495 ACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTC-CACACGCTTCATGAACAGA 3316437
Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237
||| |||||| || || || ||||||||||| | | | || | || |||||
Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377
Query 205238 TTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGGCC 205294
|| || |||||| | | ||| | ||||||||||||||||| || | | |
Sbjct 3316376 TTCCGCAGGTCCAGGAA---CTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATGCAG 3316320
Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354
| || || || | |||||| |||||||||||||| ||| | | | ||| || ||
Sbjct 3316319 AAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACA 3316260
Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414
|| ||||| || | | ||||||| || ||||| |||| | ||| |||||
Sbjct 3316259 CGAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTG 3316200
Query 205415 GCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGC 205472
|| | | || |||| || | || || || || | ||||| |||| ||| |
Sbjct 3316199 GCGCGAATGCGGTGGACAT--TCAGACCGATGCCACCGGCCGTCTTGGAGATCATGGCAC 3316142
Query 205473 AC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT-CACCAGATA 205530
|| ||||| || ||| ||||||||| | ||| |||||| || ||| ||| || |
Sbjct 3316141 ACGTCTTG-AGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCA-TGTCCACGAGGAA 3316084
Query 205531 GCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCT 205590
||| |||| ||||| || | ||||| |||| ||||||||| || |||||| |
Sbjct 3316083 GCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGT 3316024
Query 205591 GAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTG 205650
|||| ||| | | || | |||| ||||| | |||| ||||| |||| ||
Sbjct 3316023 GAAGAACTTGTTGGACATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCA 3315964
Query 205651 AATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCAC 205710
||||| | ||| | | ||||| | ||| || || | ||| | | | | ||| |
Sbjct 3315963 GATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGTCGAG 3315904
Query 205711 CTTGAGCAGATAGGCTCTCTCTAGGGT 205737
|||||| || |||| | ||| |||||
Sbjct 3315903 CTTGAGGAGGTAGGAGCGCTCCAGGGT 3315877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154941574560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |