Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq10 154 2e-32 seq3 132 5e-26 >seq2 Length=4288194 Score = 159 bits (176), Expect = 4e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||||| |||||| |||| ||| |||||| ||||| ||||| Sbjct 329365 TTACTGGCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTA 329306 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || || || |||| || | ||||||||| || || |||| |||||||||||| Sbjct 329305 GTCGGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 329246 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCG 46538 | ||| | || |||||||||| ||||||| ||||| ||| | || | |||| | Sbjct 329245 TGGCGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCCGAGG 329187 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| |||| ||| || || ||||||||||| || || || || || ||||| Sbjct 329186 ATTCCACTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| |||||||| || || ||||| | || || Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| |||||||||||| | ||| | || ||||||||| | Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765 Query 46505 ATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | || |||||| ||| || || |||| ||| || || || Sbjct 328764 ATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTT 328706 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || |||||||||||||| Sbjct 328705 GCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || |||||| || || ||||||||||| || || || | Sbjct 329119 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCC 329060 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||||||| || || |||| |||||||||||| | ||| | || |||||| Sbjct 329059 GTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 329000 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| |||||| |||||| ||| | || |||||| ||| || || |||| ||| | Sbjct 328999 GTCTTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAA 328941 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||||| || || |||||||||||||| Sbjct 328940 TCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| |||||||| || || ||||| | || || Sbjct 328656 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328597 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || |||| |||||||||||| | ||| | || |||||||||| Sbjct 328596 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 328537 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | ||||||| ||| || || || | |||||||| ||| Sbjct 328536 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 328477 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || ||||| ||||| Sbjct 328476 CCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 328410 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 328351 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 328350 ATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 328292 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || || || || | ||||||||| ||||| || ||||| || || Sbjct 328291 GTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGAC 328232 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 328231 GAAAATCTGCAT 328220 >seq10 Length=919426 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||||| ||||| ||||||||||| || || || || Sbjct 645302 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCG 645243 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||||||| | || | || ||||||| Sbjct 645242 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 645183 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| ||| ||||| || | ||||| Sbjct 645182 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 645123 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || || ||||| ||||| Sbjct 645122 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088 >seq3 Length=3655701 Score = 132 bits (146), Expect = 5e-26 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||||| || || || | || || Sbjct 2673581 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2673640 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||| || |||| |||||||||||| | ||| | || |||||||||| Sbjct 2673641 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2673700 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| |||||| ||| | | | ||||| || || || || | |||||||| | Sbjct 2673701 GATCTTGCTCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCT 2673759 Query 46563 TGCCCGTCAGCGTTTTAACAAA 46584 ||||||| || || || || || Sbjct 2673760 TGCCCGTGAGGGTCTTCACGAA 2673781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238216297520