Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2 159 4e-34
seq10 154 2e-32
seq3 132 5e-26
>seq2
Length=4288194
Score = 159 bits (176), Expect = 4e-34
Identities = 178/235 (76%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | ||| || | | ||||| |||||| |||| ||| |||||| ||||| |||||
Sbjct 329365 TTACTGGCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTA 329306
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||||| || || || |||| || | ||||||||| || || |||| ||||||||||||
Sbjct 329305 GTCGGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 329246
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCG 46538
| ||| | || |||||||||| ||||||| ||||| ||| | || | |||| |
Sbjct 329245 TGGCGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCCGAGG 329187
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||| |||| ||| || || ||||||||||| || || || || || |||||
Sbjct 329186 ATTCCACTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 150 bits (166), Expect = 2e-31
Identities = 161/210 (77%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || || |||| |||||||||||| | ||| | || ||||||||| |
Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765
Query 46505 ATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||||| ||| | || |||||| ||| || || |||| ||| || || ||
Sbjct 328764 ATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTT 328706
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||| || || ||||||||||||||
Sbjct 328705 GCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Score = 150 bits (166), Expect = 2e-31
Identities = 165/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| |||| || |||||| || || ||||||||||| || || || |
Sbjct 329119 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCC 329060
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | ||||||||| || || |||| |||||||||||| | ||| | || ||||||
Sbjct 329059 GTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 329000
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGA 46556
||| |||||| |||||| ||| | || |||||| ||| || || |||| ||| |
Sbjct 328999 GTCTTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAA 328941
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || |||||||||| || || ||||||||||||||
Sbjct 328940 TCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
Score = 143 bits (158), Expect = 3e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 328656 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328597
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || || |||| |||||||||||| | ||| | || ||||||||||
Sbjct 328596 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 328537
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||||| | | | ||||||| ||| || || || | |||||||| |||
Sbjct 328536 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 328477
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || ||||| || || ||||| |||||
Sbjct 328476 CCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| |||||
Sbjct 328410 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 328351
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||||||||||| || | || |||||||||| |||||| ||||| |||
Sbjct 328350 ATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 328292
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || || || || || | ||||||||| ||||| || ||||| || ||
Sbjct 328291 GTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGAC 328232
Query 46582 AAAGATTTGCAT 46593
|| || |||||
Sbjct 328231 GAAAATCTGCAT 328220
>seq10
Length=919426
Score = 154 bits (170), Expect = 2e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| || | || |||||||| ||||| ||||||||||| || || || ||
Sbjct 645302 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCG 645243
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||| ||||| |||| |||||||||||| | || | || |||||||
Sbjct 645242 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 645183
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| ||| ||||| || | |||||
Sbjct 645182 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 645123
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| || || || || ||||| |||||
Sbjct 645122 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq3
Length=3655701
Score = 132 bits (146), Expect = 5e-26
Identities = 152/202 (75%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| ||||| ||||||||||| || || || | || ||
Sbjct 2673581 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2673640
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||||||| || |||| |||||||||||| | ||| | || ||||||||||
Sbjct 2673641 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2673700
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
|||||| |||||| ||| | | | ||||| || || || || | |||||||| |
Sbjct 2673701 GATCTTGCTCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCT 2673759
Query 46563 TGCCCGTCAGCGTTTTAACAAA 46584
||||||| || || || || ||
Sbjct 2673760 TGCCCGTGAGGGTCTTCACGAA 2673781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238216297520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |