Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq2 145 8e-30 seq10 140 3e-28 seq3 125 7e-24 >seq1 Length=5014741 Score = 194 bits (214), Expect = 2e-44 Identities = 211/277 (76%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| || || | || ||||| | ||||||||| ||| || || Sbjct 1638237 GTAGGTGTCAATGAGCAGAGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAA 1638178 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 |||||||||||| || |||||| |||||| || || | || ||| |||||||| || | Sbjct 1638177 GCCGTAAAAGCAGCGGGCCTCGGGCACCTGGACCTCG-GCGCTGAAGCGCTCGACGAGGT 1638119 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | |||||||||||||| || ||||||||| ||||| || | ||| |||||| || Sbjct 1638118 TCTCGTTGACGATGCCATCCGAGGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAAGC 1638059 Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| |||||||| ||| | ||||||| || ||||||||||||||| | ||||| Sbjct 1638058 GCTCGTCGTCGTTCAGGCGGTTGTGCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCT 1637999 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | ||||| || || |||||| || |||||||| Sbjct 1637998 CGGCCGTCCAGAAAGAAGCCTCGTGCTTCTTGTACAT 1637962 Score = 188 bits (208), Expect = 7e-43 Identities = 348/502 (69%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || || || ||||| || ||||| || || || || || || ||| ||| ||| | Sbjct 1638865 TTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTC 1638806 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720 |||||| || ||||| |||| | | |||| |||| |||||| || |||| Sbjct 1638805 TCCATAAAGTCAAAGGGATTGGTGGAGCGGTAGACCTTGTCGTTGCCGAG-AG--CGACC 1638749 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | |||||| |||||||| ||||| ||| |||| | | || | | | ||||| Sbjct 1638748 AGCAGACGGTCGGCAACGAACTCAATGTACTGCTTCATGAGGGTGGCGTTCATG-CCCAG 1638690 Query 132780 CAGACGCACCGG-CAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||| || ||| || ||||| | ||| ||||| || ||| || ||| || Sbjct 1638689 AAGA-GCACAGGGCAGGGCCTCGGTCAAAAACTCCTGCTCAATCTTGACGGCATCGACGA 1638631 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 || ||| | | | | |||||| || | || || ||||| || ||| | Sbjct 1638630 TAATGTCCTGGATGATCTGCTTGCTCGGGCGGTTGTTCAGGTGGGAGAACAGCAGGCAGG 1638571 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 |||||||| |||| ||||||||| | |||||| || || ||| |||||||| || | Sbjct 1638570 CAAAGTCGGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCAG 1638511 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||| ||||| || || |||||||| || |||| | ||| ||| ||||| | || Sbjct 1638510 GCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGAGAAGGCGCCGCTGAAGAAAATGC 1638451 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||||||||| || || ||||| ||||||| | || |||| || ||| || |||| Sbjct 1638450 CCTCGACGGCAGCAAATGCCACGAGGCGCTGCGCAAAGGTGGACTCCTTGTCGGAAATCC 1638391 Query 133079 AGCGCAGCGCCCATTCGGCCTT 133100 ||||||| ||||| |||||||| Sbjct 1638390 AGCGCAGGGCCCACTCGGCCTT 1638369 >seq2 Length=4288194 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| |||||||| | || |||||| | | Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| ||||| |||||| ||||||| Sbjct 328280 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 328338 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 328339 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAA 328398 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || || |||| || ||| Sbjct 328399 CATCCAGAAGGAATCCACCCTCCACCTGGTCCTTCGT 328435 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || || || | || || || || | Sbjct 329132 ATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTGGAAGTGGAATCCTCG 329191 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 329192 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCA 329250 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| |||||||| ||| |||| |||| || || || ||||||||| Sbjct 329251 GCAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAA 329310 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| |||| ||||| ||||||||||| | | ||||||| Sbjct 329311 CATCCAGAAGGAGTCGACACTGCACCTGGTGCTGCGTCTTCGTGGCGGCC 329360 Score = 127 bits (140), Expect = 2e-24 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | |||||||| || || || | || || ||| | | Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| | || |||| | |||| || |||| ||||| ||||| || |||||| ||| Sbjct 328964 GACACGATTGACAACG--TCAAGAGCAAGATCCAAGACAAGGAGGGCAT-CCCGCCAGAC 329020 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || |||| |||||||| ||| |||| |||| || || || ||||||| Sbjct 329021 CAGCAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTAC 329080 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||||| |||||||||| |||||||||||| || | || || Sbjct 329081 AACATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 329130 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| |||||||| |||| |||||| | || Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | |||| || || | ||||| ||||| ||||| | ||||| Sbjct 328508 GACA-CGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCA 328566 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 328567 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 328626 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | ||||| || |||| || || || | || ||| Sbjct 328627 CATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328675 Score = 107 bits (118), Expect = 2e-18 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | |||||||| || || || | || || ||| | | Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| | || |||| | |||| || |||| ||||| ||||| || |||||| ||| Sbjct 328736 GACACGATTGACAACG--TCAAGAGCAAGATCCAAGACAAGGAGGGCAT-CCCGCCAGAC 328792 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 328793 CAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTAC 328852 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | ||||| || |||| || || || | || ||| Sbjct 328853 AACATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328903 >seq10 Length=919426 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 645088 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 645147 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| |||||| | ||||| Sbjct 645148 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 645207 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| |||| || ||||| |||||||||| Sbjct 645208 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAAC 645267 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| ||||| || |||||||||| Sbjct 645268 ATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCG 645302 >seq3 Length=3655701 Score = 125 bits (138), Expect = 7e-24 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 2673781 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2673722 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGG 38369 | |||| | |||| || |||| ||||| ||||| || |||||| ||||| ||||| Sbjct 2673721 GACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACCAGCAGCGC 2673665 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 || || | || ||||| ||||| || || | || || || ||||||||||||||| Sbjct 2673664 CTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAG 2673605 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||| || || ||||||| || Sbjct 2673604 AAGGAGTCGACCCTCCACCTGGTGCTCCG 2673576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172637443840