Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 237 2e-57 seq1 96.9 4e-15 seq3 91.5 2e-13 >seq2 Length=4288194 Score = 237 bits (262), Expect = 2e-57 Identities = 429/626 (69%), Gaps = 6/626 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 3555260 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCC 3555201 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||| |||||||||||||| || || ||| Sbjct 3555200 TCCTCAATGGTAAGGAGAGACACATCGAAAGTACCGCCACCCAGGTCAAAGATCAGGACG 3555141 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| ||||||||||| || || || || || || || || Sbjct 3555140 TTGCGCTCGCCCTCGACCTTCTTGTCGAGACCGTAGGCAATGGCAGCGGCGGTGGGCTCG 3555081 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || |||||| || ||||| | || || || || || || || Sbjct 3555080 TTGATGATACGCAGGACGTTCAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 3555021 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||||||||| || | ||| |||| |||| | |||||| Sbjct 3555020 TGAGAGTCGTTGAAGTAGGCCGGGACAGTGATGACAGCGTTGTTGACGGTGCCACCGAGG 3554961 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || ||||| || ||||| || || | | Sbjct 3554960 TAGGACTCAGCGGTCTCGCGCATCTTGGTCAGGACCATGGAGGAAATTTCCTCGGGGGTG 3554901 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||||| ||| | || || || || || || || | ||||| || |||| | | Sbjct 3554900 AACTGCTTCTTCTCGCCCTTGAACTCGACCTCGACAATGGGCTT---GCCAGCCTTGTCG 3554844 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || | ||| | | | | |||||||| |||| |||| || | |||||| | Sbjct 3554843 ATGATCTTGAAGGGAAAGTGCTTCATATCCGCTTGCACCTCAGCATCGGCAAACTTGCGG 3554784 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 3554783 CCAATGAGCCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTG 3554724 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| || || | || || | ||||| || || ||| | || || || || Sbjct 3554723 GCGGCGTCACCAATCAACCGCTC---CGTGTCCGTGAAGGCCACGAAGGACGGCGTGGTG 3554667 Query 8057 CGATTCCCTTGGTCGTTCGCAATAAT 8082 || || || ||||| || || || || Sbjct 3554666 CGGTTACCCTGGTCATTGGCGATGAT 3554641 Score = 138 bits (152), Expect = 1e-27 Identities = 345/518 (67%), Gaps = 11/518 (2%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAAT--GGATGTATAGAAATCAACGCCGTCGTATAACG 7301 || ||||| ||||| |||||||| || | ||| || || || ||||||| | | || Sbjct 898075 AGCTCCTCGAAACGGGCACGGGTGATCTGCATGC-TA-AAGTCCTCGCCGTCAAAGAGCG 898018 Query 7302 AATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACA 7359 | || || || ||||| | || ||||| | || | ||| ||||| || ||||| || Sbjct 898017 AGTCGATCTCGATGGTGGCCTGGGTGCCGCTG--GACAGCGTCCGCTTGGCACGCTCGCA 897960 Query 7360 CGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACG 7419 ||||| || | |||||| |||||||| | | || || | || ||||| || || Sbjct 897959 GGCCGTGCGCAGACGACGCAGGGCACGGGCATCGCCAGACAGGTCCTTCTTGGTCTTGCG 897900 Query 7420 TTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || || | | |||| || || | | || || || | ||||||| || Sbjct 897899 CGAGAAGTCCTTCTTGCAGTGGTCCAGCAGGTTGGTGTCAAAGTCCTGGCCACCCAGATG 897840 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || || || || || || ||||| |||| ||| || | ||||| | || ||| || Sbjct 897839 GGTGTCACCAGCCGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTCAGCAGCGACAC 897780 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599 ||| || || ||||| |||||||| | || || ||||| || | | | || Sbjct 897779 ATCGAAAGTGCCACCGCCCAGGTCGTAGATCAGGACGTTGCGCTCCTTGGCAGACTTGCC 897720 Query 7600 ATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | | |||||||| || ||||| || ||||| || || || || ||||| || ||| Sbjct 897719 AGAGCCCAGACCGTAGGCAATAGCGGCGGCCGTGGGCTCGTTGATGATACGCAGCACGTT 897660 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 |||||||| ||| | | || || || |||| || || || ||||| |||||||| Sbjct 897659 CAGGCCAGAAATGGCACCGGCGTCCTTGGTCGACTGACGCTGGTTGTCGTTGAAGTAGGC 897600 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||||||||| | ||| || | | || ||||| |||| Sbjct 897599 CGGGACCGTGATGACGGCCTTCTCAACCTTCTTGCCGA 897562 >seq1 Length=5014741 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || |||||||||||||| || || || ||||| ||||| || || | || Sbjct 484222 ATCAAAGTCCTCACCACCCAAGTGCGTGTCACCGTTGGTCGACTTGACCTCGAACACGCC 484281 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || | | || || | |||||| ||||||||||| || || | | | | Sbjct 484282 GTTGGAGATCTCCAGCACGGAGATATCAAAGGTACCACCACCAAGATCGTAGACGG---C 484338 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || || ||| | ||| || || |||||||| | || || || || || || Sbjct 484339 GATCA---CGCGGTCCGCCTCCTTCTCCAGGCCGTACGCCAGCGCAGCGGCAGTGGGCTC 484395 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTC 7694 || | | ||| || ||| ||||||||||| | ||| ||||| || || || || | Sbjct 484396 GTTGACGACACGGAGCACGTTGAGGCCAGCAAT-CTGGCCAGCATCCTTGGTGGCCTGGC 484454 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 | ||||| ||||| |||||||| |||||||| ||||| |||| | |||| Sbjct 484455 GCTGCGAGTCGTTGAAGTAGGCAGGGACCGTGACGACGGCGTTCTTGAC 484503 >seq3 Length=3655701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/266 (68%), Gaps = 9/266 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| ||| || || || || || || || || |||| || Sbjct 1116846 TCGAAATCCTCACCACCCAGGTGGGTGTCACCAGCCGTGGCAAGAACCTCGAAGACGCCC 1116905 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTC---AAAAATGAGT 7573 || ||| | || || ||||| || ||||||||||| ||||| | ||||| Sbjct 1116906 TGGTCGATGGAGAGCAGAGACACATCGAAAGTACCACCACCAAGGTCGTACACAATGA-- 1116963 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || ||| |||| | |||| || |||||||| || || || ||||| || || Sbjct 1116964 TCTGGCG-CTCGCCGTC---GGTCTTGTCCAGACCGTAGGCAATGGCGGCCGCGGTGGGC 1117019 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || | ||||| || ||| ||||| ||||| || | || || || || || || Sbjct 1117020 TCGTTGACGATACGCAGGACGTTGAGGCCGGCAATGGTACCGGCGTCCTTGGTAGCCTGG 1117079 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||||| ||||| |||||||| || Sbjct 1117080 CGTTGGTTGTCGTTGAAGTAGGCGGG 1117105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132593581840