Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 seq1 95.1 2e-14 >seq2 Length=4288194 Score = 174 bits (192), Expect = 2e-38 Identities = 930/1466 (63%), Gaps = 45/1466 (3%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| |||||||||| ||| |||||||| | || || ||| | | Sbjct 3315862 TACTTTGGCTTCAAGACCCTGGAGCGCTCCTACCTCCTCAAGCTCGACGGTAAGATTGTC 3315921 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || || ||| ||||| ||||||| || || | |||||| || || ||| | || Sbjct 3315922 GAGCGGCCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAG 3315981 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 ||| | ||||||||| || | |||||| | |||| ||||| | || || Sbjct 3315982 CGCGTTGTCGAGACATACAACTACATGTCCAACAAGTTCTTCACACACGCCTCGCCGACG 3316041 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 ||||||||||| || || || | || |||| || ||||| | | | ||| Sbjct 3316042 CTCTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAG 3316101 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || | ||||| |||| ||| |||| |||||| ||||| ||| | Sbjct 3316102 GACGACAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACG 3316161 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 || ||||| ||||| || | |||| | | |||| | | ||| || || | Sbjct 3316162 GCCGGTGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACC--GGCTCCTACATTGCCG 3316219 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || ||| | || || || || |||||||| || |||||| ||| || | Sbjct 3316220 GCACCAACGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCC 3316279 Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 |||| || |||| | ||| ||| | | || || ||| |||| | |||| Sbjct 3316280 GCTACGTGGACCAGGGTGGCAACAAGCGCCCC--GGTGCCTTCTGCA-TCTACTTGGAGC 3316336 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| || | |||||||| || |||| ||||| ||| | ||||||| Sbjct 3316337 CGTGGCACGCCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGG 3316396 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || ||| ||||| ||| |||||||||||| || ||||| ||||||||| | || | Sbjct 3316397 TCCGTGCCCGTGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGG 3316456 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 || | ||| | ||| | || | || || | || |||| || | ||| | Sbjct 3316457 AGACCAACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCT 3316516 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257 || ||||||||||| || || ||| ||||||||| || | || | | || Sbjct 3316517 ACGGCGAGGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGA 3316576 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 ||| | || | || | ||||| | || ||||| || | || || ||||| || | Sbjct 3316577 AGGT-CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAAC 3316635 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| ||||| ||| ||| |||| ||||| || || ||||| |||| Sbjct 3316636 CCGTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACC 3316695 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || || ||||| || || || || |||| | | | || ||| ||| Sbjct 3316696 ATCCGCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCC 3316755 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACAT 112494 ||||| ||| | || || | ||||| || || || || | | | |||| || | | Sbjct 3316756 GTGTGCAACTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGA-CTATA-ACAACGAGTCGT 3316813 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 ||| | | || ||||| || ||| | || ||||| ||| | | | Sbjct 3316814 ATGACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCA 3316873 Query 112555 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 |||| || | |||||||| ||| || || || || ||| | ||||| | Sbjct 3316874 TTGACGTGAACTACTACCCCGTGCCCGAG---GCACGAAACAGCAACATGCGCCACCGGC 3316930 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA---- 112667 | |||||||| ||||| || ||||| || || | ||| || ||| |||| Sbjct 3316931 CCATTGGTCTGGGTGTGCAGGGTCTGGCAGACGCCTTC-----CTGGCGCTGCGCATGCC 3316985 Query 112668 -TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 ||||| || ||| || | || || || || ||||| || || ||||| Sbjct 3316986 CTTTGAGTCGCCCGAGGCACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGC 3317045 Query 112727 CGCTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784 || | ||| | |||| | | | |||| || | || ||| | || |||| | |||| Sbjct 3317046 GGCGC-TGACG-GAGTCGTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAG 3317103 Query 112785 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCT 112843 || ||||| | || || || | || || || ||||||| | |||| | || | Sbjct 3317104 GGCTCTCCTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGG-ACGTGACGCCCTCGGA 3317162 Query 112844 TCACTACGACTGGGACGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 | | ||||||||| | || | ||| ||||||||| | ||| | || |||||| Sbjct 3317163 CCTGTGGGACTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGT 3317220 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 || || |||| || ||||| || || || || | || || |||| || || || ||| Sbjct 3317221 CTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGC 3317280 Query 112962 TTTGAACCCTACACGACGAACATCTA 112987 || || || |||||| | |||||||| Sbjct 3317281 TTCGAGCCATACACGTCCAACATCTA 3317306 >seq1 Length=5014741 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| |||| ||| | |||||||| || ||||| || |||||| || ||| Sbjct 1638412 CCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCT 1638471 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||| | || | |||||||||||||| || || ||||| ||||| |||||||| | Sbjct 1638472 TCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATG 1638531 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| || || || |||||||| || ||| || ||||| Sbjct 1638532 AGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGC 1638571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742198258720