Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 174 2e-38
seq1 95.1 2e-14
>seq2
Length=4288194
Score = 174 bits (192), Expect = 2e-38
Identities = 930/1466 (63%), Gaps = 45/1466 (3%)
Strand=Plus/Plus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605
|| ||||| |||||||||| ||| |||||||| | || || ||| | |
Sbjct 3315862 TACTTTGGCTTCAAGACCCTGGAGCGCTCCTACCTCCTCAAGCTCGACGGTAAGATTGTC 3315921
Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665
|| || ||| ||||| ||||||| || || | |||||| || || ||| | ||
Sbjct 3315922 GAGCGGCCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAG 3315981
Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725
||| | ||||||||| || | |||||| | |||| ||||| | || ||
Sbjct 3315982 CGCGTTGTCGAGACATACAACTACATGTCCAACAAGTTCTTCACACACGCCTCGCCGACG 3316041
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
||||||||||| || || || | || |||| || ||||| | | | |||
Sbjct 3316042 CTCTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAG 3316101
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| || || | ||||| |||| ||| |||| |||||| ||||| ||| |
Sbjct 3316102 GACGACAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACG 3316161
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903
|| ||||| ||||| || | |||| | | |||| | | ||| || || |
Sbjct 3316162 GCCGGTGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACC--GGCTCCTACATTGCCG 3316219
Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963
| || || || ||| | || || || || |||||||| || |||||| ||| || |
Sbjct 3316220 GCACCAACGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCC 3316279
Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017
|||| || |||| | ||| ||| | | || || ||| |||| | ||||
Sbjct 3316280 GCTACGTGGACCAGGGTGGCAACAAGCGCCCC--GGTGCCTTCTGCA-TCTACTTGGAGC 3316336
Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077
| |||||||| ||| || | |||||||| || |||| ||||| ||| | |||||||
Sbjct 3316337 CGTGGCACGCCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGG 3316396
Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137
|| ||| ||||| ||| |||||||||||| || ||||| ||||||||| | || |
Sbjct 3316397 TCCGTGCCCGTGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGG 3316456
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
|| | ||| | ||| | || | || || | || |||| || | ||| |
Sbjct 3316457 AGACCAACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCT 3316516
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257
|| ||||||||||| || || ||| ||||||||| || | || | | ||
Sbjct 3316517 ACGGCGAGGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGA 3316576
Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316
||| | || | || | ||||| | || ||||| || | || || ||||| || |
Sbjct 3316577 AGGT-CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAAC 3316635
Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376
|| | ||||| ||||| ||| ||| |||| ||||| || || ||||| ||||
Sbjct 3316636 CCGTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACC 3316695
Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436
||| || || ||||| || || || || |||| | | | || ||| |||
Sbjct 3316696 ATCCGCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCC 3316755
Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACAT 112494
||||| ||| | || || | ||||| || || || || | | | |||| || | |
Sbjct 3316756 GTGTGCAACTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGA-CTATA-ACAACGAGTCGT 3316813
Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554
||| | | || ||||| || ||| | || ||||| ||| | | |
Sbjct 3316814 ATGACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCA 3316873
Query 112555 TTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611
|||| || | |||||||| ||| || || || || ||| | ||||| |
Sbjct 3316874 TTGACGTGAACTACTACCCCGTGCCCGAG---GCACGAAACAGCAACATGCGCCACCGGC 3316930
Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA---- 112667
| |||||||| ||||| || ||||| || || | ||| || ||| ||||
Sbjct 3316931 CCATTGGTCTGGGTGTGCAGGGTCTGGCAGACGCCTTC-----CTGGCGCTGCGCATGCC 3316985
Query 112668 -TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726
||||| || ||| || | || || || || ||||| || || |||||
Sbjct 3316986 CTTTGAGTCGCCCGAGGCACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGC 3317045
Query 112727 CGCTCTTGAGGCGAGT--TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784
|| | ||| | |||| | | | |||| || | || ||| | || |||| | ||||
Sbjct 3317046 GGCGC-TGACG-GAGTCGTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAG 3317103
Query 112785 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCT 112843
|| ||||| | || || || | || || || ||||||| | |||| | || |
Sbjct 3317104 GGCTCTCCTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGG-ACGTGACGCCCTCGGA 3317162
Query 112844 TCACTACGACTGGGACGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901
| | ||||||||| | || | ||| ||||||||| | ||| | || ||||||
Sbjct 3317163 CCTGTGGGACTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGT 3317220
Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961
|| || |||| || ||||| || || || || | || || |||| || || || |||
Sbjct 3317221 CTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGC 3317280
Query 112962 TTTGAACCCTACACGACGAACATCTA 112987
|| || || |||||| | ||||||||
Sbjct 3317281 TTCGAGCCATACACGTCCAACATCTA 3317306
>seq1
Length=5014741
Score = 95.1 bits (104), Expect = 2e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231
||||||| |||| ||| | |||||||| || ||||| || |||||| || |||
Sbjct 1638412 CCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCT 1638471
Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291
||| | || | |||||||||||||| || || ||||| ||||| |||||||| |
Sbjct 1638472 TCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATG 1638531
Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| || || || |||||||| || ||| || |||||
Sbjct 1638532 AGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGC 1638571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742198258720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |