Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=4288194 Score = 143 bits (158), Expect = 3e-29 Identities = 1037/1644 (63%), Gaps = 71/1644 (4%) Strand=Plus/Minus Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATAT---CAATGACATCCTTCATCTTGAT 105753 |||||| || ||| |||||| | ||| ||||| | |||| | ||| | | ||| Sbjct 3317544 CTGGTCGATAAAGGCACCACGGTCTGCAGCCATCTGCACAAT--CGTCCG-CTGCGAGAT 3317488 Query 105754 TTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAAT 105813 |||||||| || ||| || |||||| || | ||||| | | || || || || Sbjct 3317487 CTCCCACACCGTCTTGTACAGGGCCTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGAT 3317428 Query 105814 TGAACC---CCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTT 105870 ||||| | |||| ||| || | | |||||| | | ||||| ||||| || | Sbjct 3317427 CGAACCGTTCTCCGCAATGA---TGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTC 3317371 Query 105871 CTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCT 105930 || || |||| || | |||||| | | ||||| || || || | | Sbjct 3317370 GACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCG 3317311 Query 105931 CAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 105990 | |||||||| | |||||| || || ||||| || || || |||| || || | || Sbjct 3317310 CGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGT 3317251 Query 105991 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCG 106050 || || || ||||| || |||| || |||||||| || | ||| | |||||||| Sbjct 3317250 CGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC-- 3317193 Query 106051 TTC--CTTGAGAACATCCCAGTCGTA---GTT-GAGCTTGGTTTCACCTTCCCACATATC 106104 ||| | || |||||||| | || ||| || |||| | ||||||| || Sbjct 3317192 TTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCCGAG---GGCGTCACGT-CCCACATGTC 3317137 Query 106105 AAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGC 106164 || || | || || ||| ||||| |||||| |||| | |||| ||| | | Sbjct 3317136 GGGCTGCAGAATGCCCTGCGACACAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGAT 3317077 Query 106165 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 106224 | |||| | || | || ||| | ||||| || ||||| || ||||| | Sbjct 3317076 CTTGGCCAGCGCGCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTT 3317017 Query 106225 ATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACA 106279 |||| | || || || ||||| |||| |||| || || | Sbjct 3317016 GTTCAGCAGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGG-----CG 3316962 Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || || ||||| || ||||||| |||||| || | ||| ||||| || ||||| || Sbjct 3316961 TCTGCCAGACCCTGCACACCCAGACCAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC- 3316903 Query 106340 GTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 ||| ||||| || | || |||||||| ||||| || || | ||| | | Sbjct 3316902 --CTCGGGCACGGGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACAACCAAC 3316845 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCT----TCATTGACATA 106452 | |||| || || || | | ||| | ||| || | | | ||| | Sbjct 3316844 TGCGTGACGTCGTGCAGCCGCTGGAAGTCATA----CGACTCGTTGTTATAGTCGACGAA 3316789 Query 106453 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 106512 | ||||| || | || ||||| ||||| || ||| ||| ||| | | |||||| Sbjct 3316788 CGACGGAAGAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCCGGCGCCGAGTACTC 3316729 Query 106513 TAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 | ||| || || |||| ||| || || || || |||| ||||| ||||| ||||| Sbjct 3316728 CACAATCTCCGTGCACAGGTTCGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTT 3316669 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 |||||| ||||||||||||||| | || | |||||||||||||| | || || Sbjct 3316668 GCGGTTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAG 3316609 Query 106633 AATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGCCTC 106689 ||| || | ||||| | || | | || | || | | | | | || ||||| ||| Sbjct 3316608 AATGGCGTACCACAGCTTCTGGGCCTTG-ACCTT--CTTACGACCACGGCCCTCGCTCTC 3316552 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CT 106748 |||||| ||| || || ||||||||||| || || | || || || || || Sbjct 3316551 GTACTTCTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCC-GGCGCACT 3316493 Query 106749 TGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTG 106808 | || || | || | ||| | || ||| || ||||||||||| || || | Sbjct 3316492 CATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGG 3316433 Query 106809 GAATCC--ACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 | |||| | || || |||| ||||| | ||| || |||| || | ||| ||||| Sbjct 3316432 GGATCCAGAGAGCGAGGAAA--AGATCACGGGCACGGA-CCTCCTCCTTACCCTGGTTCT 3316376 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC-GATA 106924 || | || |||||||| | || ||| |||||||| ||||| | |||| ||| || Sbjct 3316375 TCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGA-TGCAGAAG 3316317 Query 106925 GATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 106980 | || | | | | ||| | || | || ||||| || ||| |||||| || || Sbjct 3316316 GCACCGGGGCGCTTGTTG-CCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACG 3316258 Query 106981 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 107040 |||||| || || || || | ||| || || || || ||| || |||| Sbjct 3316257 AAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGC 3316198 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 | | |||| | || || || || || ||| ||| ||||| |||||| Sbjct 3316197 GCGAATGCGGTGGACATTCAGACCGATGCCACCGGCCGTCTTGGAGATCATGGCACACGT 3316138 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | | || || | ||||| || | || ||| ||||| || | | |||||||| Sbjct 3316137 CTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGA 3316078 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||| ||| | || || || || |||||||| || || | ||||| |||| | Sbjct 3316077 AGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGA- 3316019 Query 107221 ACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGC 107279 || | | |||||| | || ||||||||| | || || | || || || ||| | Sbjct 3316018 ACTTGTTGGACATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAGATAC 3315959 Query 107280 CGATGGCCACACGCATAAACATGT 107303 | | |||||||||||| | ||||| Sbjct 3315958 CAACGGCCACACGCATGATCATGT 3315935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980608256240