Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 147 5e-30 seq10 129 1e-24 seq3 122 2e-22 >seq2 Length=4288194 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || || | || ||||| Sbjct 329340 ACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329281 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || || || || || |||||||| |||||||| || ||||| || Sbjct 329280 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGG 329221 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| |||||||||||||| ||||||||| || |||| |||||| Sbjct 329220 ATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTG 329161 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 329160 CCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || ||||| |||| || || | || || || Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| || |||||||| || ||||| || Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| |||||||| |||||| || || ||||| || | ||||| Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCAT 328220 >seq10 Length=919426 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| |||| || || | || || || Sbjct 645296 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCC 645237 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || || || |||||||| |||||||| || ||||| || Sbjct 645236 AGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 645177 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| || ||||| |||||||| | ||||| Sbjct 645176 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 645117 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 645116 CCCGTGAGGGTCTTGACGAAGATCTGCAT 645088 >seq3 Length=3655701 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || || | ||||| ||| Sbjct 2673582 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCG 2673641 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 2673642 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2673701 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||||||||| || || || ||||| | ||||| Sbjct 2673702 ATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 2673761 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || || | || || ||||| Sbjct 2673762 CCCGTGAGGGTCTTCACGAA 2673781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481230403942