Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 3e-20
seq10 98.7 6e-16
seq3 98.7 6e-16
>seq2
Length=4288194
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||| ||| | || |||| |||||||| || || |||||
Sbjct 328638 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 328579
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| |||| | ||||||||||| |||||| |||||
Sbjct 328578 ATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTG 328519
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | ||| || |||| || ||||| || || || || ||||| ||
Sbjct 328518 TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACG 328459
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 328458 AAGATCTGCATA 328447
Score = 105 bits (116), Expect = 4e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| |||||||| ||| | || |||| |||||||| || || |||||
Sbjct 328866 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 328807
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| |||| | ||||||||||| ||||| ||||||
Sbjct 328806 ATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTG 328747
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | |||||| || | || || || || ||||| | ||||| |||
Sbjct 328746 TCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACA 328687
Query 34971 AAGATCTGCAT 34981
||||| |||||
Sbjct 328686 AAGATTTGCAT 328676
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||||||||| ||||| || || | || | || |||
Sbjct 329112 ACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329053
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || ||||| || || || ||||||||| |||| | |||||||||||
Sbjct 329052 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328993
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | |||| || | |||||| || | || || || ||
Sbjct 328992 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328933
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | ||||| |||||||| |||||
Sbjct 328932 CCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || || | || | || |||
Sbjct 329340 ACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329281
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| || || ||||| || || || ||||||||| |||| | |||||||||||
Sbjct 329280 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGG 329221
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| |||||| | || | || || || || || | || || || ||
Sbjct 329220 ATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTG 329161
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||| || ||||| || || |||||||||
Sbjct 329160 CCCGTCAGGGTCTTGACGAAAATCTGCATA 329131
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| ||| ||||| ||||| ||||| || ||| | || | || |||
Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || |||||||| | || | |||||||||||
Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | || ||||| ||
Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| ||||| || || ||||||||
Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCAT 328220
>seq10
Length=919426
Score = 98.7 bits (108), Expect = 6e-16
Identities = 151/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||||| || ||||| ||||| ||||| || ||| | || | || |||
Sbjct 645296 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCC 645237
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || ||||||||| | || | |||||||||||
Sbjct 645236 AGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 645177
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || || | ||| || ||
Sbjct 645176 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 645121
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||| ||||| || |||||||||||
Sbjct 645120 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq3
Length=3655701
Score = 98.7 bits (108), Expect = 6e-16
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || | || |||| || ||||| || ||||||||
Sbjct 2673600 TCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 2673659
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| ||||| ||||||
Sbjct 2673660 ATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG 2673719
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || || ||| || |||| ||| ||||| || |||||||| ||||||||
Sbjct 2673720 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 2673779
Query 34971 AA 34972
||
Sbjct 2673780 AA 2673781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633497131728
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