Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 seq10 98.7 6e-16 seq3 98.7 6e-16 >seq2 Length=4288194 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| |||||||| || || ||||| Sbjct 328638 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 328579 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| |||||| ||||| Sbjct 328578 ATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTG 328519 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| || ||||| || || || || ||||| || Sbjct 328518 TCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACG 328459 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 328458 AAGATCTGCATA 328447 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| |||||||| || || ||||| Sbjct 328866 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 328807 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| ||||| |||||| Sbjct 328806 ATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTG 328747 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || || ||||| | ||||| ||| Sbjct 328746 TCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACA 328687 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 328686 AAGATTTGCAT 328676 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || || | || | || ||| Sbjct 329112 ACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329053 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || ||||||||| |||| | ||||||||||| Sbjct 329052 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328993 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | |||||| || | || || || || Sbjct 328992 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328933 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | ||||| |||||||| ||||| Sbjct 328932 CCCGTCAAGGTCTTGACAAAGATTTGCAT 328904 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | || | || ||| Sbjct 329340 ACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329281 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || ||||||||| |||| | ||||||||||| Sbjct 329280 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGG 329221 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | || || || || || | || || || || Sbjct 329220 ATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTG 329161 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| || || ||||||||| Sbjct 329160 CCCGTCAGGGTCTTGACGAAAATCTGCATA 329131 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||| ||||| ||||| ||||| || ||| | || | || ||| Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | || ||||| || Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || || |||||||| Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCAT 328220 >seq10 Length=919426 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 645296 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCC 645237 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||||||| | || | ||||||||||| Sbjct 645236 AGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 645177 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || || | ||| || || Sbjct 645176 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 645121 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||| || ||||||||||| Sbjct 645120 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088 >seq3 Length=3655701 Score = 98.7 bits (108), Expect = 6e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || ||||| || |||||||| Sbjct 2673600 TCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 2673659 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| |||||| Sbjct 2673660 ATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTG 2673719 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| ||| ||||| || |||||||| |||||||| Sbjct 2673720 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACG 2673779 Query 34971 AA 34972 || Sbjct 2673780 AA 2673781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633497131728