Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq10 116 3e-21 >seq2 Length=4288194 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || ||||| ||| || ||||| ||||| || || || | || Sbjct 329121 AGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGG 329062 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| || || | || | ||||||| Sbjct 329061 CCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 329002 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || |||| ||| ||||||| |||| Sbjct 329001 TTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTA 328942 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||| || || ||||| || ||||| Sbjct 328941 ATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| ||||| || || || ||| || || || ||||| || || Sbjct 329359 GCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 329300 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| ||||||||||| || ||||| ||||| ||||| || || | || Sbjct 329299 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329240 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || || | ||||| Sbjct 329239 AATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCAC 329180 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||||||| || ||||||| || || || ||||||||||| Sbjct 329179 TTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || ||||| ||| || || || ||||| || || || | || | || ||| Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| ||||| || || | || | |||||||||||| Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || |||| ||| ||||||| ||||||||| || Sbjct 328764 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328705 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || ||||| || ||||| Sbjct 328704 CCCGTCAAGGTCTTGACAAAGATTTGCAT 328676 >seq10 Length=919426 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | ||||||| ||||| || ||||||||||| || || || ||||| || | Sbjct 645316 CGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 645257 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| |||||| || || || ||||| ||||| || || | || Sbjct 645256 ACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 645197 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| || ||| | | | || |||| ||||| Sbjct 645196 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCA 645137 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||| | || || || || ||||| | || || || || |||||||| || Sbjct 645136 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGGT 645085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937479290398