Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 407 3e-108 seq1 179 7e-40 >seq2 Length=4288194 Score = 407 bits (450), Expect = 3e-108 Identities = 1231/1873 (66%), Gaps = 70/1873 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 ||||| ||||| | || | || ||||||| ||||| || ||||||||||| ||||| Sbjct 3317687 ACCGTGAACTGGATGGGCTGTGCGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTG 3317628 Query 212613 AGGCCCTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671 |||||| |||||| ||| | |||||| ||||| |||| | || || | Sbjct 3317627 AGGCCCAGCTTCCAGCCCGTGAA-GTGCATGCTTGTGA---TCTTGCCC---ATGGTCGG 3317575 Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731 ||| | |||| | |||||| ||||| |||||| || || | | | Sbjct 3317574 CTCACGCATGTGG---------ATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACG 3317524 Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791 ||| || ||||| | | || | ||| |||| ||||||||| |||||| | | | Sbjct 3317523 GTCTGCAGCCATCTGCACAATCGTCCGCTGCGAGATCTCCCACACCGTCTTGTACAGGGC 3317464 Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAG 212848 |||| ||| | |||| | ||| |||||||| | || || | | ||| | | Sbjct 3317463 CTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCG 3317404 Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 | | ||||| || ||| || ||| || ||||| ||||| ||| || Sbjct 3317403 GTTCTT---CATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGG 3317347 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | |||||| || || | ||||| | || | ||| | ||| || ||||| || Sbjct 3317346 GTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGG 3317287 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||| || ||||||||| ||||||||||| | || || || ||||| || ||||| Sbjct 3317286 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCAC 3317227 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| |||||||| | ||| |||||||| ||| |||| ||| |||||||||| Sbjct 3317226 CAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCA 3317167 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 ||||||| | | |||||| ||||||||| ||||| ||||| | Sbjct 3317166 ---------CAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGA 3317116 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 ||| || ||||| || | ||||| || | |||||||||| |||| ||| | Sbjct 3317115 CACAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTC 3317056 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 | ||| || |||| ||||||||| || || |||| | |||| ||| ||||| || Sbjct 3317055 CGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGG 3316996 Query 213269 GGACGTGAAGGGCATCATCATGCGTT-GGAACACATCAGCCAGCCCCTGGACCCCGATGC 213327 ||| |||||||| || ||| |||| | || ||||| ||||| || || | | Sbjct 3316995 CGACTCAAAGGGCATGCGCA-GCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGAC 3316937 Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 | ||||| | ||| | || ||| || | || ||| || |||||| |||| | Sbjct 3316936 CAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC-CTCGGGCACGGGGTAGTAGTTCACG 3316878 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG--- 213443 || ||||| ||||||||||||| ||| | ||||| | | ||| || | Sbjct 3316877 TCAATGATGCGGTTGAGGTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCGCTGGAAG 3316818 Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 | || || ||| | ||| || ||| || || || | ||||| |||| Sbjct 3316817 TCATACGACTCGTTGTTATAGTCG---ACGAACGACGGAAGAGCCAGCGAGGCCAAGTTG 3316761 Query 213504 CAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563 || ||||||||||| | | | | |||||||| ||||| ||||||||||| || Sbjct 3316760 CACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGCTG 3316701 Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCAT 213622 ||||||||||||||||||| ||||| ||| ||| | |||| |||||||||||||| Sbjct 3316700 CGGATGGTGCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGTAGAGCAT 3316642 Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682 | | ||| || ||||| ||| | | |||| || | ||| || | | |||||| Sbjct 3316641 GAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTT 3316582 Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATT 213741 || || || || | ||| | | || |||||||| ||||| ||| | | || | Sbjct 3316581 GA----CCTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACT 3316526 Query 213742 CGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCC 213800 | | ||| || | | | |||| || | || ||| ||||| || |||| || Sbjct 3316525 CCTCGCCGTAGCAATCCG-CCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCG 3316467 Query 213801 CCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 ||| | |||| || | || ||||||||| || |||| ||| || ||| ||| || || Sbjct 3316466 CCGTTGGTCTC-CACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATC 3316408 Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919 | || | ||| ||| || ||| || ||||| || || || ||||||| || Sbjct 3316407 ACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATC 3316348 Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTC 213976 |||||||||||||||| ||||||| ||||| || | || | ||||| |||||||| Sbjct 3316347 GGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTC 3316288 Query 213977 CACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-C 214035 ||| | |||| |||| |||| || || | || | | |||||||| ||| | Sbjct 3316287 CACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGA-TGTGC 3316229 Query 214036 CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTAT 214093 ||||||| || || || || ||||||| ||| | | | || ||| ||| || || Sbjct 3316228 CGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGA--CCGAT 3316171 Query 214094 GCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCAT 214153 ||||||||| ||||||||||||||| || | | | || || |||||| | || Sbjct 3316170 GCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAAT 3316111 Query 214154 GCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGA 214213 |||||| || | | || || | ||||||| || ||||| | | || || ||| | Sbjct 3316110 GCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGC 3316051 Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 |||||| ||||| || ||| || | | |||||||| || | | |||| ||||| Sbjct 3316050 GTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTC 3315991 Query 214274 CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCT 214332 | || | |||| ||| | || ||| | ||| | |||||||| Sbjct 3315990 GACAACGCGCTCCACATCGTCACCCCAGATACCAACGGC-CACACGCATGATCATGTGCT 3315932 Query 214333 GGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCT 214389 | |||| || | || || | | | |||||| ||||||||||||||||| |||| Sbjct 3315931 GCGGCCGCTCGACAATCTTACCGTCGAG---CTTGAGGAGGTAGGAGCGCTCCAGGGTCT 3315875 Query 214390 TGAACCCAAAGTA 214402 |||| |||||||| Sbjct 3315874 TGAAGCCAAAGTA 3315862 >seq1 Length=5014741 Score = 179 bits (198), Expect = 7e-40 Identities = 356/518 (69%), Gaps = 13/518 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 1638863 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 1638804 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| ||| ||||| |||| | | || ||| |||| ||| | |||||| Sbjct 1638803 CATAAAGTCAAAGGGATTGGTGGAGCGGTAGACCT-TGTCGTTGCCGAGAGCGACCAGCA 1638745 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || ||| |||| ||||| | |||||||||| ||||||||| | || | Sbjct 1638744 GACGGTCGGCAACGAACTCAATGTACTGCTTCATGAGGGTGGCGTTCATGCCCAGAAGAG 1638685 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||||| |||| || | |||||||| ||| |||| ||||| || | | ||| Sbjct 1638684 -CACAGGGCAGGGCCTCGGTCAAAAACTCCTGCTCAATCTTGACGGCATCGACGATAATG 1638626 Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | || | | || || || | ||||| |||||| || | |||| |||| Sbjct 1638625 TCCTGGATGATCTGCTTGCTCGGGCGGTTGTT---CAGGTG---GGAGAACAGCAGGCAG 1638572 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| ||| ||||| ||| || ||| | |||||||| |||||| Sbjct 1638571 GCAAAGTCGGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCA 1638512 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || ||||||||||| || | || ||| | ||| |||||| ||| Sbjct 1638511 GGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGAGAAGGCGCCGCTGAAGAAAATG 1638452 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || || || || ||| | || | || | | | |||||| || ||| Sbjct 1638451 CCCTCGACGGCAGCAAATGCCACGAGGCGCTGCGCAAAGGTGGACTCCTTGTCGGAAATC 1638392 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||||| || |||||||| |||||| || Sbjct 1638391 CAGCGCAGGGCCCACTCGGCCTTCTTGCGGATGCAGGG 1638354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532497251840