Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2 407 3e-108
seq1 179 7e-40
>seq2
Length=4288194
Score = 407 bits (450), Expect = 3e-108
Identities = 1231/1873 (66%), Gaps = 70/1873 (4%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
||||| ||||| | || | || ||||||| ||||| || ||||||||||| |||||
Sbjct 3317687 ACCGTGAACTGGATGGGCTGTGCGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTG 3317628
Query 212613 AGGCCCTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTG 212671
|||||| |||||| ||| | |||||| ||||| |||| | || || |
Sbjct 3317627 AGGCCCAGCTTCCAGCCCGTGAA-GTGCATGCTTGTGA---TCTTGCCC---ATGGTCGG 3317575
Query 212672 GTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCT 212731
||| | |||| | |||||| ||||| |||||| || || | | |
Sbjct 3317574 CTCACGCATGTGG---------ATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACG 3317524
Query 212732 GTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTC 212791
||| || ||||| | | || | ||| |||| ||||||||| |||||| | | |
Sbjct 3317523 GTCTGCAGCCATCTGCACAATCGTCCGCTGCGAGATCTCCCACACCGTCTTGTACAGGGC 3317464
Query 212792 TTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAG 212848
|||| ||| | |||| | ||| |||||||| | || || | | ||| | |
Sbjct 3317463 CTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCG 3317404
Query 212849 CTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908
| | ||||| || ||| || ||| || ||||| ||||| ||| ||
Sbjct 3317403 GTTCTT---CATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGG 3317347
Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968
|||||| | |||||| || || | ||||| | || | ||| | ||| || ||||| ||
Sbjct 3317346 GTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGG 3317287
Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028
||||| || ||||||||| ||||||||||| | || || || ||||| || |||||
Sbjct 3317286 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCAC 3317227
Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088
||| |||||||| | ||| |||||||| ||| |||| ||| ||||||||||
Sbjct 3317226 CAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCA 3317167
Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148
||||||| | | |||||| ||||||||| ||||| ||||| |
Sbjct 3317166 ---------CAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGA 3317116
Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208
||| || ||||| || | ||||| || | |||||||||| |||| ||| |
Sbjct 3317115 CACAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTC 3317056
Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268
| ||| || |||| ||||||||| || || |||| | |||| ||| ||||| ||
Sbjct 3317055 CGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGG 3316996
Query 213269 GGACGTGAAGGGCATCATCATGCGTT-GGAACACATCAGCCAGCCCCTGGACCCCGATGC 213327
||| |||||||| || ||| |||| | || ||||| ||||| || || | |
Sbjct 3316995 CGACTCAAAGGGCATGCGCA-GCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGAC 3316937
Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386
| ||||| | ||| | || ||| || | || ||| || |||||| |||| |
Sbjct 3316936 CAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC-CTCGGGCACGGGGTAGTAGTTCACG 3316878
Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG--- 213443
|| ||||| ||||||||||||| ||| | ||||| | | ||| || |
Sbjct 3316877 TCAATGATGCGGTTGAGGTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCGCTGGAAG 3316818
Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503
| || || ||| | ||| || ||| || || || | ||||| ||||
Sbjct 3316817 TCATACGACTCGTTGTTATAGTCG---ACGAACGACGGAAGAGCCAGCGAGGCCAAGTTG 3316761
Query 213504 CAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563
|| ||||||||||| | | | | |||||||| ||||| ||||||||||| ||
Sbjct 3316760 CACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGCTG 3316701
Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCAT 213622
||||||||||||||||||| ||||| ||| ||| | |||| ||||||||||||||
Sbjct 3316700 CGGATGGTGCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGTAGAGCAT 3316642
Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682
| | ||| || ||||| ||| | | |||| || | ||| || | | ||||||
Sbjct 3316641 GAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTT 3316582
Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATT 213741
|| || || || | ||| | | || |||||||| ||||| ||| | | || |
Sbjct 3316581 GA----CCTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACT 3316526
Query 213742 CGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCC 213800
| | ||| || | | | |||| || | || ||| ||||| || |||| ||
Sbjct 3316525 CCTCGCCGTAGCAATCCG-CCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCG 3316467
Query 213801 CCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859
||| | |||| || | || ||||||||| || |||| ||| || ||| ||| || ||
Sbjct 3316466 CCGTTGGTCTC-CACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATC 3316408
Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919
| || | ||| ||| || ||| || ||||| || || || ||||||| ||
Sbjct 3316407 ACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATC 3316348
Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTC 213976
|||||||||||||||| ||||||| ||||| || | || | ||||| ||||||||
Sbjct 3316347 GGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTC 3316288
Query 213977 CACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-C 214035
||| | |||| |||| |||| || || | || | | |||||||| ||| |
Sbjct 3316287 CACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGA-TGTGC 3316229
Query 214036 CGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTAT 214093
||||||| || || || || ||||||| ||| | | | || ||| ||| || ||
Sbjct 3316228 CGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGA--CCGAT 3316171
Query 214094 GCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCAT 214153
||||||||| ||||||||||||||| || | | | || || |||||| | ||
Sbjct 3316170 GCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAAT 3316111
Query 214154 GCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGA 214213
|||||| || | | || || | ||||||| || ||||| | | || || ||| |
Sbjct 3316110 GCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGC 3316051
Query 214214 GTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273
|||||| ||||| || ||| || | | |||||||| || | | |||| |||||
Sbjct 3316050 GTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTC 3315991
Query 214274 CAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCT 214332
| || | |||| ||| | || ||| | ||| | ||||||||
Sbjct 3315990 GACAACGCGCTCCACATCGTCACCCCAGATACCAACGGC-CACACGCATGATCATGTGCT 3315932
Query 214333 GGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCT 214389
| |||| || | || || | | | |||||| ||||||||||||||||| ||||
Sbjct 3315931 GCGGCCGCTCGACAATCTTACCGTCGAG---CTTGAGGAGGTAGGAGCGCTCCAGGGTCT 3315875
Query 214390 TGAACCCAAAGTA 214402
|||| ||||||||
Sbjct 3315874 TGAAGCCAAAGTA 3315862
>seq1
Length=5014741
Score = 179 bits (198), Expect = 7e-40
Identities = 356/518 (69%), Gaps = 13/518 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || || | ||||| |||||||| ||||| || ||| |||||||||||
Sbjct 1638863 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTC 1638804
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
||| ||| ||||| |||| | | || ||| |||| ||| | ||||||
Sbjct 1638803 CATAAAGTCAAAGGGATTGGTGGAGCGGTAGACCT-TGTCGTTGCCGAGAGCGACCAGCA 1638745
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| | || || ||| |||| ||||| | |||||||||| ||||||||| | || |
Sbjct 1638744 GACGGTCGGCAACGAACTCAATGTACTGCTTCATGAGGGTGGCGTTCATGCCCAGAAGAG 1638685
Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||| ||||| |||| || | |||||||| ||| |||| ||||| || | | |||
Sbjct 1638684 -CACAGGGCAGGGCCTCGGTCAAAAACTCCTGCTCAATCTTGACGGCATCGACGATAATG 1638626
Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133
| || | | || || || | ||||| |||||| || | |||| ||||
Sbjct 1638625 TCCTGGATGATCTGCTTGCTCGGGCGGTTGTT---CAGGTG---GGAGAACAGCAGGCAG 1638572
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|||||||| |||||| ||| ||||| ||| || ||| | |||||||| ||||||
Sbjct 1638571 GCAAAGTCGGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCA 1638512
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | || ||||||||||| || | || ||| | ||| |||||| |||
Sbjct 1638511 GGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGAGAAGGCGCCGCTGAAGAAAATG 1638452
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
||||| || || || || || ||| | || | || | | | |||||| || |||
Sbjct 1638451 CCCTCGACGGCAGCAAATGCCACGAGGCGCTGCGCAAAGGTGGACTCCTTGTCGGAAATC 1638392
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||| || ||||| || |||||||| |||||| ||
Sbjct 1638391 CAGCGCAGGGCCCACTCGGCCTTCTTGCGGATGCAGGG 1638354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931532497251840
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