Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 324 3e-83
seq1 158 2e-33
>seq2
Length=4288194
Score = 324 bits (358), Expect = 3e-83
Identities = 1047/1626 (64%), Gaps = 46/1626 (3%)
Strand=Plus/Minus
Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124
||| | ||||| ||| |||||| | || |||| |||||| || | ||| |||||
Sbjct 3317397 CATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCAC 3317338
Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184
||||| || || | ||||| | || | ||| | ||| || ||| | || |||| ||
Sbjct 3317337 CTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGCA 3317278
Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244
||||||||||||||| ||||| | ||| || || ||||| || ||||||||||||||
Sbjct 3317277 CTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACT 3317218
Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304
|||||||| ||| ||||| | | ||||| || |||||| ||
Sbjct 3317217 GTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCA--------- 3317167
Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364
|||||| | ||||| |||
Sbjct 3317166 CAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGACACAGGAGA 3317107
Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGC 221424
|| || || | | ||||| ||| | | | |||| | ||||| |||| |||||| ||
Sbjct 3317106 GCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTCAGCGC 3317047
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484
||||||||||||||||| |||||| |||||| || |||||||| || ||
Sbjct 3317046 CGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTCAAA 3316987
Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544
|||||| |||||| | | ||| |||| ||||| ||||| || || | ||| |||||||
Sbjct 3316986 GGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGGCCG 3316927
Query 221545 GTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602
||| | | ||||| | || || || |||||||| || |||| ||||| || |
Sbjct 3316926 GTGGCGCATGTTGCTGTTTCGT--GCCTCGGGCACGGGGTAGTAGTTCACGTCAATGATG 3316869
Query 221603 TTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACC 221662
||||||||| | | | | || ||| |||| |||| | ||
Sbjct 3316868 CGGTTGAGGTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCGCTGGAAGTCATACG-- 3316811
Query 221663 AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTA 221722
||||| | | || || | | || ||| || || ||||| |||
Sbjct 3316810 -ACTCGTTGTTATAGTCGACGAACGACGGAAGAGC--------CAGCGA-GGCCAAGTTG 3316761
Query 221723 CACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT---GCTG 221779
|||||||||||||||||| | |||| | ||||| || || ||||| ||||
Sbjct 3316760 CACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGCTG 3316701
Query 221780 CACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGAG 221838
| |||||| ||||||| || || || |||||| ||| ||| | |||||||||||
Sbjct 3316700 CG---GATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCTTGTAGAG 3316645
Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGC 221898
||| || || ||| |||||| ||| ||| ||||||| || ||| || | |||||
Sbjct 3316644 CATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCT-TCTGGG 3316586
Query 221899 GCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957
|| | | || ||| | |||||| ||| | | | || || ||| ||||
Sbjct 3316585 CCTTGACCTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCG---TACAGCGCCTCAA 3316529
Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017
||| || ||||| || ||||||| | ||| ||| |||||||| |||| |
Sbjct 3316528 ACTCCTCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACT 3316469
Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077
|||| | || | || |||||| || || |||||||| || || | || ||||
Sbjct 3316468 CGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGAT 3316409
Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137
| | || || ||||||| || | ||| |||| ||| |||| |||||||| | |
Sbjct 3316408 CACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACAT 3316349
Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGCTTGTTGCCACCCTG 222195
| |||||||||||||||| |||| | |||| || ||||| |||||||||||||||||
Sbjct 3316348 CGGCGTGCCACGGCTCCAAGTAGATG--CAGAAGGCACCGGGGCGCTTGTTGCCACCCTG 3316291
Query 222196 ATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCG 222255
||||| | || ||| |||| ||||| | || | | |||||||||
Sbjct 3316290 GTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGT 3316231
Query 222256 ACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGAT 222315
||||||||||| |||||| | ||| ||| | | | | || || |||||
Sbjct 3316230 GCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGAT 3316171
Query 222316 ACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCAT 222375
|||||||| || ||||||||||| || ||||||| ||||| ||||||||| ||
Sbjct 3316170 GCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAAT 3316111
Query 222376 AGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGC 222435
||| ||||| | || || || || || || |||| ||||| | || | | |||
Sbjct 3316110 GCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGC 3316051
Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||| || ||||| || ||||||||| ||| | | ||||| | ||| |||||
Sbjct 3316050 GTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTC 3315991
Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555
|| || | | | | ||| || || | ||| | |||| ||||| |||
Sbjct 3315990 GACAACGCGCTCCACATCGTCACCCCAGATACCAACGGCCACACGCATGATCATGTGCTG 3315931
Query 222556 GGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTG 222613
|||| ||| ||| || | ||||| ||| ||||| || ||||| ||||||
Sbjct 3315930 CGGCCGCTCGACAATCTTACCGTCGAGCT--TGAGGAGGTAGGAGCGCTCCAGGGTCTTG 3315873
Query 222614 AACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGAC 222673
|| |||||||| | | || ||||| | | ||| || | ||| | ||| | ||| |
Sbjct 3315872 AAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCGAGTCAAAGTCCTCC 3315813
Query 222674 TTGTGC 222679
||||||
Sbjct 3315812 TTGTGC 3315807
>seq1
Length=5014741
Score = 158 bits (174), Expect = 2e-33
Identities = 304/450 (68%), Gaps = 13/450 (3%)
Strand=Plus/Plus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| || || || |||||||| || |||||||| || |||||||| | || || |||
Sbjct 1638421 AGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCA 1638480
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATC 25995
|||||||||||||| || || ||||| || ||| ||||| ||||| ||||| ||
Sbjct 1638481 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTG-ACTTTCTCCAATGAGCTGATT 1638539
Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055
| | |||||||| || |||| || |||||||||||||| | | | |||| || |
Sbjct 1638540 TCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTC---CCACCTGAAC 1638596
Query 26056 CACAAACCTTCTCAAG-AGACCGTC---TACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111
|| || |||| ||| | || ||| |||| || || || || |||| ||
Sbjct 1638597 AAC-CGCCCGAGCAAGCAGATCATCCAGGACATTATCGTC---GATGCCGTCAAGATTGA 1638652
Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171
| |||||||| ||||||||||| || |||||
Sbjct 1638653 GCAGGAGTTTTTGACCGAGGCCCTGCCCTGTGCTCTTCTGGGCATGAACGCCACCCTCAT 1638712
Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231
|| || |||||||||| || ||||||| ||||||| | || || || || |
Sbjct 1638713 GAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCGCTCTCGGCAACGACAAGGT 1638772
Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291
|||| | | | || || || ||||||||||| ||||| || ||| || ||||||||
Sbjct 1638773 CTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAA 1638832
Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| || ||| | ||||||||||| ||
Sbjct 1638833 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 1638862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844498125440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |