Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 324 3e-83 seq1 158 2e-33 >seq2 Length=4288194 Score = 324 bits (358), Expect = 3e-83 Identities = 1047/1626 (64%), Gaps = 46/1626 (3%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 ||| | ||||| ||| |||||| | || |||| |||||| || | ||| ||||| Sbjct 3317397 CATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCAC 3317338 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || || | ||||| | || | ||| | ||| || ||| | || |||| || Sbjct 3317337 CTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAGCA 3317278 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||| ||||| | ||| || || ||||| || |||||||||||||| Sbjct 3317277 CTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACT 3317218 Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304 |||||||| ||| ||||| | | ||||| || |||||| || Sbjct 3317217 GTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCA--------- 3317167 Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364 |||||| | ||||| ||| Sbjct 3317166 CAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGACACAGGAGA 3317107 Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGC 221424 || || || | | ||||| ||| | | | |||| | ||||| |||| |||||| || Sbjct 3317106 GCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTCAGCGC 3317047 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| |||||| |||||| || |||||||| || || Sbjct 3317046 CGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTCAAA 3316987 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 |||||| |||||| | | ||| |||| ||||| ||||| || || | ||| ||||||| Sbjct 3316986 GGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGGCCG 3316927 Query 221545 GTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602 ||| | | ||||| | || || || |||||||| || |||| ||||| || | Sbjct 3316926 GTGGCGCATGTTGCTGTTTCGT--GCCTCGGGCACGGGGTAGTAGTTCACGTCAATGATG 3316869 Query 221603 TTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACC 221662 ||||||||| | | | | || ||| |||| |||| | || Sbjct 3316868 CGGTTGAGGTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCGCTGGAAGTCATACG-- 3316811 Query 221663 AACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTA 221722 ||||| | | || || | | || ||| || || ||||| ||| Sbjct 3316810 -ACTCGTTGTTATAGTCGACGAACGACGGAAGAGC--------CAGCGA-GGCCAAGTTG 3316761 Query 221723 CACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT---GCTG 221779 |||||||||||||||||| | |||| | ||||| || || ||||| |||| Sbjct 3316760 CACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGCTG 3316701 Query 221780 CACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTTGTAGAG 221838 | |||||| ||||||| || || || |||||| ||| ||| | ||||||||||| Sbjct 3316700 CG---GATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCCTTGTAGAG 3316645 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGC 221898 ||| || || ||| |||||| ||| ||| ||||||| || ||| || | ||||| Sbjct 3316644 CATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCT-TCTGGG 3316586 Query 221899 GCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 || | | || ||| | |||||| ||| | | | || || ||| |||| Sbjct 3316585 CCTTGACCTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCG---TACAGCGCCTCAA 3316529 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || ||||| || ||||||| | ||| ||| |||||||| |||| | Sbjct 3316528 ACTCCTCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACT 3316469 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 |||| | || | || |||||| || || |||||||| || || | || |||| Sbjct 3316468 CGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGAT 3316409 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | || || ||||||| || | ||| |||| ||| |||| |||||||| | | Sbjct 3316408 CACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACAT 3316349 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGA--GCGCCGGGTCGCTTGTTGCCACCCTG 222195 | |||||||||||||||| |||| | |||| || ||||| ||||||||||||||||| Sbjct 3316348 CGGCGTGCCACGGCTCCAAGTAGATG--CAGAAGGCACCGGGGCGCTTGTTGCCACCCTG 3316291 Query 222196 ATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCG 222255 ||||| | || ||| |||| ||||| | || | | ||||||||| Sbjct 3316290 GTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGT 3316231 Query 222256 ACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGAT 222315 ||||||||||| |||||| | ||| ||| | | | | || || ||||| Sbjct 3316230 GCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGAT 3316171 Query 222316 ACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCAT 222375 |||||||| || ||||||||||| || ||||||| ||||| ||||||||| || Sbjct 3316170 GCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAAT 3316111 Query 222376 AGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGC 222435 ||| ||||| | || || || || || || |||| ||||| | || | | ||| Sbjct 3316110 GCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGC 3316051 Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||| || ||||| || ||||||||| ||| | | ||||| | ||| ||||| Sbjct 3316050 GTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTC 3315991 Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555 || || | | | | ||| || || | ||| | |||| ||||| ||| Sbjct 3315990 GACAACGCGCTCCACATCGTCACCCCAGATACCAACGGCCACACGCATGATCATGTGCTG 3315931 Query 222556 GGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTG 222613 |||| ||| ||| || | ||||| ||| ||||| || ||||| |||||| Sbjct 3315930 CGGCCGCTCGACAATCTTACCGTCGAGCT--TGAGGAGGTAGGAGCGCTCCAGGGTCTTG 3315873 Query 222614 AACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCGAC 222673 || |||||||| | | || ||||| | | ||| || | ||| | ||| | ||| | Sbjct 3315872 AAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCGAGTCAAAGTCCTCC 3315813 Query 222674 TTGTGC 222679 |||||| Sbjct 3315812 TTGTGC 3315807 >seq1 Length=5014741 Score = 158 bits (174), Expect = 2e-33 Identities = 304/450 (68%), Gaps = 13/450 (3%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || || |||||||| || |||||||| || |||||||| | || || ||| Sbjct 1638421 AGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCA 1638480 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATC 25995 |||||||||||||| || || ||||| || ||| ||||| ||||| ||||| || Sbjct 1638481 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTG-ACTTTCTCCAATGAGCTGATT 1638539 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | | |||||||| || |||| || |||||||||||||| | | | |||| || | Sbjct 1638540 TCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTC---CCACCTGAAC 1638596 Query 26056 CACAAACCTTCTCAAG-AGACCGTC---TACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 || || |||| ||| | || ||| |||| || || || || |||| || Sbjct 1638597 AAC-CGCCCGAGCAAGCAGATCATCCAGGACATTATCGTC---GATGCCGTCAAGATTGA 1638652 Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171 | |||||||| ||||||||||| || ||||| Sbjct 1638653 GCAGGAGTTTTTGACCGAGGCCCTGCCCTGTGCTCTTCTGGGCATGAACGCCACCCTCAT 1638712 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 || || |||||||||| || ||||||| ||||||| | || || || || | Sbjct 1638713 GAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCGCTCTCGGCAACGACAAGGT 1638772 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 |||| | | | || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 1638773 CTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAA 1638832 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| || ||| | ||||||||||| || Sbjct 1638833 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 1638862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844498125440