Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 1e-28
>seq2
Length=4288194
Score = 141 bits (156), Expect = 1e-28
Identities = 890/1406 (63%), Gaps = 55/1406 (4%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| || || | || ||| || || || | || ||
Sbjct 3315928 CCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTT 3315987
Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330
| ||||||||| || | |||||| | | || | |||| ||||| | || || |||||
Sbjct 3315988 GTCGAGACATACAACTACATGTCCAACAAGT-TCTTCACACACGCCTCGCCGACGCTCTT 3316046
Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390
||| || || || || | ||| |||| |||||||| | | || ||||| ||
Sbjct 3316047 CAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGA 3316106
Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450
| || | || ||||| | || || | | |||||| ||||| ||| ||| ||
Sbjct 3316107 CAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGG 3316166
Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510
|| || || || | |||| | | |||| || ||| || || ||
Sbjct 3316167 TGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAA 3316226
Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570
|| ||| | || || || || |||||||| || |||||| ||| || ||||| ||
Sbjct 3316227 CGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGT 3316286
Query 75571 AAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626
| || | | ||| | || || || || |||||||||| || ||||| |
Sbjct 3316287 GGACCAGG-GTGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACG 3316345
Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686
||||| || | |||||||| || | || ||||| ||| | || |||| || |||
Sbjct 3316346 CCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGG-TCCGTGCC 3316404
Query 75687 -GAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743
| ||||| |||| || || | |||| || || || ||||||||||| || |||
Sbjct 3316405 CGTGATCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCA 3316462
Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAG-GCACCAGGTCTCTCCGACGCGGTGGGT 75802
|| | ||| | || | || || | || || || || || | || ||
Sbjct 3316463 ACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCC-GGCCTGGCGGATTGCTACGGC 3316521
Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTAGAGCCAATGCGACTGT 75861
||||||||||| || || ||| ||||| || ||| ||||| | | | || ||
Sbjct 3316522 GAGGAGTTTGAGGCGCTGTACGAGAAGTACGA-GAGCGAGGGCCGTGGTCGTAAGAAGGT 3316580
Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920
| || | | || | | ||| | || ||||| | | ||||||||||| || | || |
Sbjct 3316581 -CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGT 3316639
Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980
||||| |||||||| || ||| ||||| ||||| ||||| |||| || |||
Sbjct 3316640 TCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCC 3316699
Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040
||||| || || |||||||| ||| | |||||| | | ||| ||| ||| || |
Sbjct 3316700 GCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGT 3316759
Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA----AGAGACTCGCACTTTT 76096
|||| ||||| || | || ||||| || ||| | | | || ||| | |
Sbjct 3316760 GCAACTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGACTATAACAACGAGTCG----TAT 3316815
Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156
|| | | || || || |||| || | ||| | || || ||||| |||||
Sbjct 3316816 GACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCATT 3316875
Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213
||| || | || ||||| ||| || ||||| || ||||| ||| | ||
Sbjct 3316876 GACGTGAACTACTACCCCGTGCCCGAG---GCACGAAACAGCAACATGCGCCACCGGCCC 3316932
Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268
|||||| ||||||| || ||||| || || | || || |||| |||| |
Sbjct 3316933 ATTGGTCTGGGTGTGCAGGGTCTGGCAGACG-----CCTTCCTGGCGCTGCGCATGCCCT 3316987
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
|||| || || || | |||| | ||||| || ||||| || |||||
Sbjct 3316988 TTGAGTCGCCCGAGGCACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGCGG 3317047
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
| ||| || | || | |||| | | | ||| |||| | |||| |||||| |
Sbjct 3317048 CGCTGACGGAGTCGTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCT 3317107
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTC-AAC 76447
|||| | ||| || || | || ||| || ||||||| | |||| || ||| ||
Sbjct 3317108 CTCCTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGG-ACGTGACGCC---CTCGGAC 3317163
Query 76448 ---TACGACTGGGATGTTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502
| |||||||| || | ||| ||||||||| | ||| | || |||||||
Sbjct 3317164 CTGTGGGACTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGTC 3317221
Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562
| || |||| || ||||| || || || || | || || |||| || || || ||||
Sbjct 3317222 TGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCT 3317281
Query 76563 TTGAACCATACACAACAAACATCTAC 76588
| || |||||||| | |||||||||
Sbjct 3317282 TCGAGCCATACACGTCCAACATCTAC 3317307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569406114880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |