Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=4288194 Score = 141 bits (156), Expect = 1e-28 Identities = 890/1406 (63%), Gaps = 55/1406 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || | || ||| || || || | || || Sbjct 3315928 CCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTT 3315987 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||||||| || | |||||| | | || | |||| ||||| | || || ||||| Sbjct 3315988 GTCGAGACATACAACTACATGTCCAACAAGT-TCTTCACACACGCCTCGCCGACGCTCTT 3316046 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | ||| |||| |||||||| | | || ||||| || Sbjct 3316047 CAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGA 3316106 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | || ||||| | || || | | |||||| ||||| ||| ||| || Sbjct 3316107 CAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGG 3316166 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || || || || | |||| | | |||| || ||| || || || Sbjct 3316167 TGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAA 3316226 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || ||| | || || || || |||||||| || |||||| ||| || ||||| || Sbjct 3316227 CGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGT 3316286 Query 75571 AAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | || | | ||| | || || || || |||||||||| || ||||| | Sbjct 3316287 GGACCAGG-GTGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACG 3316345 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 ||||| || | |||||||| || | || ||||| ||| | || |||| || ||| Sbjct 3316346 CCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGG-TCCGTGCC 3316404 Query 75687 -GAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | ||||| |||| || || | |||| || || || ||||||||||| || ||| Sbjct 3316405 CGTGATCT--TTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCA 3316462 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAG-GCACCAGGTCTCTCCGACGCGGTGGGT 75802 || | ||| | || | || || | || || || || || | || || Sbjct 3316463 ACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCC-GGCCTGGCGGATTGCTACGGC 3316521 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG-GAGGGTAGAGCCAATGCGACTGT 75861 ||||||||||| || || ||| ||||| || ||| ||||| | | | || || Sbjct 3316522 GAGGAGTTTGAGGCGCTGTACGAGAAGTACGA-GAGCGAGGGCCGTGGTCGTAAGAAGGT 3316580 Query 75862 ACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | || | | || | | ||| | || ||||| | | ||||||||||| || | || | Sbjct 3316581 -CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGT 3316639 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| |||||||| || ||| ||||| ||||| ||||| |||| || ||| Sbjct 3316640 TCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCC 3316699 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 ||||| || || |||||||| ||| | |||||| | | ||| ||| ||| || | Sbjct 3316700 GCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGT 3316759 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA----AGAGACTCGCACTTTT 76096 |||| ||||| || | || ||||| || ||| | | | || ||| | | Sbjct 3316760 GCAACTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGACTATAACAACGAGTCG----TAT 3316815 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | | || || || |||| || | ||| | || || ||||| ||||| Sbjct 3316816 GACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCATT 3316875 Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 ||| || | || ||||| ||| || ||||| || ||||| ||| | || Sbjct 3316876 GACGTGAACTACTACCCCGTGCCCGAG---GCACGAAACAGCAACATGCGCCACCGGCCC 3316932 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268 |||||| ||||||| || ||||| || || | || || |||| |||| | Sbjct 3316933 ATTGGTCTGGGTGTGCAGGGTCTGGCAGACG-----CCTTCCTGGCGCTGCGCATGCCCT 3316987 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 |||| || || || | |||| | ||||| || ||||| || ||||| Sbjct 3316988 TTGAGTCGCCCGAGGCACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGCGG 3317047 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | ||| || | || | |||| | | | ||| |||| | |||| |||||| | Sbjct 3317048 CGCTGACGGAGTCGTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCT 3317107 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTC-AAC 76447 |||| | ||| || || | || ||| || ||||||| | |||| || ||| || Sbjct 3317108 CTCCTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGG-ACGTGACGCC---CTCGGAC 3317163 Query 76448 ---TACGACTGGGATGTTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502 | |||||||| || | ||| ||||||||| | ||| | || ||||||| Sbjct 3317164 CTGTGGGACTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGTC 3317221 Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562 | || |||| || ||||| || || || || | || || |||| || || || |||| Sbjct 3317222 TGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCT 3317281 Query 76563 TTGAACCATACACAACAAACATCTAC 76588 | || |||||||| | ||||||||| Sbjct 3317282 TCGAGCCATACACGTCCAACATCTAC 3317307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569406114880