Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 266 4e-66 seq10 163 4e-35 seq3 156 6e-33 >seq2 Length=4288194 Score = 266 bits (294), Expect = 4e-66 Identities = 468/677 (69%), Gaps = 5/677 (1%) Strand=Plus/Plus Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422 |||| ||| | |||||||| || ||||| || || || || | ||| ||||| || || | Sbjct 3554639 AGATCATCGCCAATGACCAGGGTAACCGCACCACGCCGTCCTTCGTGGCCTTCACGGACA 3554698 Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482 || || | |||| || ||||| || || ||| || |||||||| || || | Sbjct 3554699 CGGAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCG 3554758 Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542 |||| ||||| ||||| || ||||| ||||||||| | ||| | || |||| |||| Sbjct 3554759 TCTTCGACGCCAAGCGGCTCATTGGCCGCAAGTTTGCCGATGCTGAGGTGCAAGCGGATA 3554818 Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602 | ||| ||| | | | ||| | || | ||||| ||||| || | | || | Sbjct 3554819 TGAAGCACTTTCCCT-TCAAGATCATC--GACAAGGCTGGCAAGCCCATTGTCGAGGTCG 3554875 Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662 | || | || |||||||| || || | ||||| |||||||| || ||||| ||| | Sbjct 3554876 AGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGACCA 3554935 Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 ||||| ||||| || || || | | | ||| || || || | || || | |||| Sbjct 3554936 AGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCACTG 3554995 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || || ||||| || |||||||| | | ||||| | Sbjct 3554996 TCCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCG 3555055 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 |||| ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 3555056 GTCTGAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTACGGTCTCG 3555115 Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902 ||||||| || | || || || |||||||||| || ||||| ||||| || | Sbjct 3555116 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGTACTTTCG 3555175 Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962 |||| || || || | ||||| | ||||| ||||| || ||| | ||||||||||| | Sbjct 3555176 ATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTGGTGACA 3555235 Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021 |||| | |||||||| || || || ||||| || || |||||| | |||||| Sbjct 3555236 CTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTC-AACGAGTTC 3555294 Query 196022 CGTCGAAAGAATAAGAA 196038 || ||||| ||||| Sbjct 3555295 AAGCGCAAGAACAAGAA 3555311 Score = 194 bits (214), Expect = 2e-44 Identities = 187/239 (78%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || ||||| || || || ||||| |||||||| |||| Sbjct 328443 GTGGTATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGT 328502 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||| ||||| || |||| ||||||||| || ||||| |||||||| || | Sbjct 328503 CGTCCGACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAG 328562 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || || |||||||| || ||||| || ||||| || |||||| | || | Sbjct 328563 ACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACT 328622 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 ||||| | || ||||||||||| || ||||| ||||| | || || ||||| ||||| Sbjct 328623 ACAACATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGCATGCAA 328681 Score = 181 bits (200), Expect = 1e-40 Identities = 181/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||| | || || || || || || | |||||||||||||| Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||| ||||| ||||| ||||| || || || ||| Sbjct 328736 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 328795 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || |||||||| || ||||| || ||||| || |||||| | || |||||| Sbjct 328796 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328855 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 | || ||||||||||| || ||||| ||||| | || || ||||| ||||| Sbjct 328856 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGCATGCAA 328909 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||| | || || || || || || | |||||||||||||| Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||| ||||| ||||| ||||| || || || ||| Sbjct 328964 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 329023 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || |||||||| || || ||| | ||||| || || || || | || |||||| Sbjct 329024 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329083 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| |||||||| || || ||| | || || | || || |||||| Sbjct 329084 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGT 329131 Score = 86.0 bits (94), Expect = 8e-12 Identities = 209/316 (66%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||||| ||| || || || || | || | | || || | || | Sbjct 897535 AGATGAAGGAGATTGCCGAGGTCAAGATCGGCAAGAAGGTTGAGAAGGCCGTCATCACGG 897594 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | || || ||||||| || || || ||| |||| |||||||| | ||| ||| | | Sbjct 897595 TCCCGGCCTACTTCAACGACAACCAGCGTCAGTCGACCAAGGACGCCGGTGCCATTTCTG 897654 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| || | || ||||| || || || || || || ||||| || ||||||| Sbjct 897655 GCCTGAACGTGCTGCGTATCATCAACGAGCCCACGGCCGCCGCTATTGCCTACGGTCTGG 897714 Query 195843 ACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 | |||| | | | || || || |||||| || || || ||||| || | Sbjct 897715 GCTCTGGCAAGTCTGCCAAGGAGCGCAACGTCCTGATCTACGACCTGGGCGGTGGCACTT 897774 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 | ||||| || || || || || | || ||| | ||| || ||||| || ||||||| Sbjct 897775 TCGATGTGTCGCTGCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACGGCTGGTG 897834 Query 195960 ATACTCATCTAGGTGG 195975 | || ||||| ||||| Sbjct 897835 ACACCCATCTGGGTGG 897850 >seq10 Length=919426 Score = 163 bits (180), Expect = 4e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| |||||||| Sbjct 645088 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 645147 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 645148 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 645207 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 645208 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAAC 645267 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || |||||| || || ||||| || || |||| || ||||| || Sbjct 645268 ATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCGC 645317 >seq3 Length=3655701 Score = 156 bits (172), Expect = 6e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || ||||| ||||| || || || || |||||||||||||| ||||| || ||||| ||| Sbjct 2673781 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2673722 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| |||| |||||| || || ||||| ||||| || || || ||||| || || Sbjct 2673721 GACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTG 2673662 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050 || ||||| || || ||||| || ||||| || || || | || |||||| | || ||| Sbjct 2673661 ATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAG 2673602 Query 172051 GAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| || || ||||| || || | || || |||||| Sbjct 2673601 GAGTCGACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGT 2673563 Score = 104 bits (114), Expect = 3e-17 Identities = 183/263 (70%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784 || || ||||||| || ||||| ||||| || |||||||| | | | ||||| || Sbjct 1117105 CCCGCCTACTTCAACGACAACCAACGCCAGGCTACCAAGGACGCCGGTACCATTGCCGGC 1117046 Query 195785 CTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGAC 195844 || ||| || | || |||| || || || ||||| || ||||| || ||||||||| Sbjct 1117045 CTCAACGTCCTGCGTATCGTCAACGAGCCCACCGCGGCCGCCATTGCCTACGGTCTGGAC 1116986 Query 195845 AAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGAT 195904 |||| | | | || || | || |||| | | || || ||||||||||| || ||| Sbjct 1116985 AAGACCGACGGCG-AGCGCCAGAT-CATTG-TGTACGACCTTGGTGGTGGTACTTTCGAT 1116929 Query 195905 GTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACT 195964 || || || ||| || || || | ||||| || || || |||||||| || Sbjct 1116928 GTGTCTCTGCTCTCCATCGACCAGGGCGTCTTCGAGGTTCTTGCCACGGCTGGTGACACC 1116869 Query 195965 CATCTAGGTGGTGAAGATTTCGA 195987 || || |||||||| |||||||| Sbjct 1116868 CACCTGGGTGGTGAGGATTTCGA 1116846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862186194720