Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 266 4e-66
seq10 163 4e-35
seq3 156 6e-33
>seq2
Length=4288194
Score = 266 bits (294), Expect = 4e-66
Identities = 468/677 (69%), Gaps = 5/677 (1%)
Strand=Plus/Plus
Query 195363 AGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATA 195422
|||| ||| | |||||||| || ||||| || || || || | ||| ||||| || || |
Sbjct 3554639 AGATCATCGCCAATGACCAGGGTAACCGCACCACGCCGTCCTTCGTGGCCTTCACGGACA 3554698
Query 195423 ATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTG 195482
|| || | |||| || ||||| || || ||| || |||||||| || || |
Sbjct 3554699 CGGAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCG 3554758
Query 195483 TCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATA 195542
|||| ||||| ||||| || ||||| ||||||||| | ||| | || |||| ||||
Sbjct 3554759 TCTTCGACGCCAAGCGGCTCATTGGCCGCAAGTTTGCCGATGCTGAGGTGCAAGCGGATA 3554818
Query 195543 TAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTG 195602
| ||| ||| | | | ||| | || | ||||| ||||| || | | || |
Sbjct 3554819 TGAAGCACTTTCCCT-TCAAGATCATC--GACAAGGCTGGCAAGCCCATTGTCGAGGTCG 3554875
Query 195603 AATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTA 195662
| || | || |||||||| || || | ||||| |||||||| || ||||| ||| |
Sbjct 3554876 AGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGACCA 3554935
Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722
||||| ||||| || || || | | | ||| || || || | || || | ||||
Sbjct 3554936 AGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCACTG 3554995
Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782
| || || ||||||| || || || || ||||| || |||||||| | | ||||| |
Sbjct 3554996 TCCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCG 3555055
Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842
|||| ||| || | || ||||| || || || || ||||| ||||| || ||||| |
Sbjct 3555056 GTCTGAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTACGGTCTCG 3555115
Query 195843 ACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTG 195902
||||||| || | || || || |||||||||| || ||||| ||||| || |
Sbjct 3555116 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGTACTTTCG 3555175
Query 195903 ATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATA 195962
|||| || || || | ||||| | ||||| ||||| || ||| | ||||||||||| |
Sbjct 3555176 ATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTGGTGACA 3555235
Query 195963 CTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTC 196021
|||| | |||||||| || || || ||||| || || |||||| | ||||||
Sbjct 3555236 CTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTC-AACGAGTTC 3555294
Query 196022 CGTCGAAAGAATAAGAA 196038
|| ||||| |||||
Sbjct 3555295 AAGCGCAAGAACAAGAA 3555311
Score = 194 bits (214), Expect = 2e-44
Identities = 187/239 (78%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || || ||||| || || || ||||| |||||||| ||||
Sbjct 328443 GTGGTATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGT 328502
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
|||| ||||| ||||| || |||| ||||||||| || ||||| |||||||| || |
Sbjct 328503 CGTCCGACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAG 328562
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || || || |||||||| || ||||| || ||||| || |||||| | || |
Sbjct 328563 ACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACT 328622
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093
||||| | || ||||||||||| || ||||| ||||| | || || ||||| |||||
Sbjct 328623 ACAACATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGCATGCAA 328681
Score = 181 bits (200), Expect = 1e-40
Identities = 181/234 (77%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||||||||| || ||| | || || || || || || | ||||||||||||||
Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || ||| |||| |||||| ||||| ||||| ||||| || || || |||
Sbjct 328736 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 328795
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || |||||||| || ||||| || ||||| || |||||| | || ||||||
Sbjct 328796 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328855
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093
| || ||||||||||| || ||||| ||||| | || || ||||| |||||
Sbjct 328856 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGCATGCAA 328909
Score = 159 bits (176), Expect = 5e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||||||||| || ||| | || || || || || || | ||||||||||||||
Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || ||| |||| |||||| ||||| ||||| ||||| || || || |||
Sbjct 328964 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 329023
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || |||||||| || || ||| | ||||| || || || || | || ||||||
Sbjct 329024 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329083
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|||| |||||||| || || ||| | || || | || || ||||||
Sbjct 329084 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGT 329131
Score = 86.0 bits (94), Expect = 8e-12
Identities = 209/316 (66%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722
|||||||||||| ||| || || || || | || | | || || | || |
Sbjct 897535 AGATGAAGGAGATTGCCGAGGTCAAGATCGGCAAGAAGGTTGAGAAGGCCGTCATCACGG 897594
Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782
| || || ||||||| || || || ||| |||| |||||||| | ||| ||| | |
Sbjct 897595 TCCCGGCCTACTTCAACGACAACCAGCGTCAGTCGACCAAGGACGCCGGTGCCATTTCTG 897654
Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842
| || ||| || | || ||||| || || || || || || ||||| || |||||||
Sbjct 897655 GCCTGAACGTGCTGCGTATCATCAACGAGCCCACGGCCGCCGCTATTGCCTACGGTCTGG 897714
Query 195843 ACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899
| |||| | | | || || || |||||| || || || ||||| || |
Sbjct 897715 GCTCTGGCAAGTCTGCCAAGGAGCGCAACGTCCTGATCTACGACCTGGGCGGTGGCACTT 897774
Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959
| ||||| || || || || || | || ||| | ||| || ||||| || |||||||
Sbjct 897775 TCGATGTGTCGCTGCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCCACGGCTGGTG 897834
Query 195960 ATACTCATCTAGGTGG 195975
| || ||||| |||||
Sbjct 897835 ACACCCATCTGGGTGG 897850
>seq10
Length=919426
Score = 163 bits (180), Expect = 4e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 645088 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 645147
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| |||||||| || || |||
Sbjct 645148 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 645207
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || || || || ||||| | || ||||||
Sbjct 645208 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAAC 645267
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091
| || |||||| || || ||||| || || |||| || ||||| ||
Sbjct 645268 ATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCGC 645317
>seq3
Length=3655701
Score = 156 bits (172), Expect = 6e-33
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930
|| ||||| ||||| || || || || |||||||||||||| ||||| || ||||| |||
Sbjct 2673781 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2673722
Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990
|| ||| |||| |||||| || || ||||| ||||| || || || ||||| || ||
Sbjct 2673721 GACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTG 2673662
Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAG 172050
|| ||||| || || ||||| || ||||| || || || | || |||||| | || |||
Sbjct 2673661 ATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAG 2673602
Query 172051 GAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| || || ||||| || || | || || ||||||
Sbjct 2673601 GAGTCGACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGT 2673563
Score = 104 bits (114), Expect = 3e-17
Identities = 183/263 (70%), Gaps = 3/263 (1%)
Strand=Plus/Minus
Query 195725 CCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGT 195784
|| || ||||||| || ||||| ||||| || |||||||| | | | ||||| ||
Sbjct 1117105 CCCGCCTACTTCAACGACAACCAACGCCAGGCTACCAAGGACGCCGGTACCATTGCCGGC 1117046
Query 195785 CTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGAC 195844
|| ||| || | || |||| || || || ||||| || ||||| || |||||||||
Sbjct 1117045 CTCAACGTCCTGCGTATCGTCAACGAGCCCACCGCGGCCGCCATTGCCTACGGTCTGGAC 1116986
Query 195845 AAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGAT 195904
|||| | | | || || | || |||| | | || || ||||||||||| || |||
Sbjct 1116985 AAGACCGACGGCG-AGCGCCAGAT-CATTG-TGTACGACCTTGGTGGTGGTACTTTCGAT 1116929
Query 195905 GTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACT 195964
|| || || ||| || || || | ||||| || || || |||||||| ||
Sbjct 1116928 GTGTCTCTGCTCTCCATCGACCAGGGCGTCTTCGAGGTTCTTGCCACGGCTGGTGACACC 1116869
Query 195965 CATCTAGGTGGTGAAGATTTCGA 195987
|| || |||||||| ||||||||
Sbjct 1116868 CACCTGGGTGGTGAGGATTTCGA 1116846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862186194720
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