Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_021221.1 Length=45781 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 5e-13 >seq1 Length=5014741 Score = 87.8 bits (96), Expect = 5e-13 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 1052 GCCGGTTACGACTTGTGTAGCGCGGCGGACGTGATCGTGCCCGCCCAAGGGCGAG-CGCT 1110 ||||| |||||| ||| |||| | |||| | | ||||| | ||||| || |||| Sbjct 673753 GCCGGCTACGACCTGTACGCCGCGCGTGCTGTGACCAT-CCCGCACCAGGGCAAGGCGCT 673811 Query 1111 GATCCCGACCGACCTGTCCTTCGAGTTCCCGAAGGGGGTCTATGGGCGTCTCGCTCCTCG 1170 || ||||||||| || | | | ||||| || || || || | || || || Sbjct 673812 CGTCGATACCGACCTGGCCATTGCGGTCCCGCCCGGCACGTACGGCCGCATTGCGCCGCG 673871 Query 1171 TTCGGGGCTGGCGGTGAAACACTTTATCGATGTGGGGGCGGGCGTGATAGACGGCGACTA 1230 |||||||| || | || |||||||||||| ||| ||||| || || |||| |||||| Sbjct 673872 GTCGGGGCTTGCCGCCAAGCACTTTATCGATACGGGAGCGGGTGTCATTGACGCCGACTA 673931 Query 1231 TCGAGGCATCGTGTGCGTGCTGCTGTTTAA 1260 || ||| ||| |||||||||| || || Sbjct 673932 CCGCGGCCAGGTGCGCGTGCTGCTCTTCAA 673961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146377554805916