Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 1e-19
seq4 100 8e-16
>seq1
Length=5014741
Score = 113 bits (124), Expect = 1e-19
Identities = 191/275 (69%), Gaps = 4/275 (1%)
Strand=Plus/Minus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||||| ||||| | || |||||||| ||||| || | || || || ||
Sbjct 40472 GTCTTCCAGCGCCTTGACCAGCCGGCGCTGAATGTAACCCGTCTCGGCCGTCTTGACGGC 40413
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|| ||||| ||||| | |||||| |||| || |||||||| | ||| ||| ||
Sbjct 40412 CGTGTCAATGAGACCTTCGCGACCAGCCATGGCGTGGAAGAAAAACTCGGTGGGTGTAAG 40353
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | | | ||| |||| || || ||||| ||||||||||| | |||| ||||||
Sbjct 40352 ACCACGCAGGTACGAGTTCTCGACAAAGCCACGGGCCTCGGGCGAGTAGTCGTCCTTGGT 40293
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|||||| ||||| || | || || | || | || |||||| || || || ||||
Sbjct 40292 AAAGTGAGGCAGCGTGCGGTACTTGAATCCAAAAGGAATACGCCGACCTTCCACAATCTG 40233
Query 302811 CTGTCCCAGGCACGAAA--TCATCTGCGAAATATT 302843
||| |||| || || ||||||||||||| ||
Sbjct 40232 CTGGCCCA--CAAGAGCCGTCATCTGCGAAATGTT 40200
>seq4
Length=2521912
Score = 100 bits (110), Expect = 8e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490
|| |||| ||| ||||| || | ||| | || || ||||| |||| | || |||
Sbjct 2220784 TGCACGCGGTACGCATCCGAGACCTCAAACAGGCGCTCCTTGAGGAAGGCCGCCGCGCCG 2220725
Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550
|| | |||||| |||||||||||||| || ||||| ||||||||||| ||||| || | |
Sbjct 2220724 TGCGCAATCATGCAATCACGCTCCATCTCTCCGAACCGAAGACCACCGTCGCGCGCACGA 2220665
Query 251551 CCCTCGGCAGGCTGACGAGT 251570
|||||| | ||||| || ||
Sbjct 2220664 CCCTCGACCGGCTGCCGCGT 2220645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817109700762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |