Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 113 1e-19 seq4 100 8e-16 >seq1 Length=5014741 Score = 113 bits (124), Expect = 1e-19 Identities = 191/275 (69%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| ||||| | || |||||||| ||||| || | || || || || Sbjct 40472 GTCTTCCAGCGCCTTGACCAGCCGGCGCTGAATGTAACCCGTCTCGGCCGTCTTGACGGC 40413 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 || ||||| ||||| | |||||| |||| || |||||||| | ||| ||| || Sbjct 40412 CGTGTCAATGAGACCTTCGCGACCAGCCATGGCGTGGAAGAAAAACTCGGTGGGTGTAAG 40353 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| || || ||||| ||||||||||| | |||| |||||| Sbjct 40352 ACCACGCAGGTACGAGTTCTCGACAAAGCCACGGGCCTCGGGCGAGTAGTCGTCCTTGGT 40293 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 |||||| ||||| || | || || | || | || |||||| || || || |||| Sbjct 40292 AAAGTGAGGCAGCGTGCGGTACTTGAATCCAAAAGGAATACGCCGACCTTCCACAATCTG 40233 Query 302811 CTGTCCCAGGCACGAAA--TCATCTGCGAAATATT 302843 ||| |||| || || ||||||||||||| || Sbjct 40232 CTGGCCCA--CAAGAGCCGTCATCTGCGAAATGTT 40200 >seq4 Length=2521912 Score = 100 bits (110), Expect = 8e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 || |||| ||| ||||| || | ||| | || || ||||| |||| | || ||| Sbjct 2220784 TGCACGCGGTACGCATCCGAGACCTCAAACAGGCGCTCCTTGAGGAAGGCCGCCGCGCCG 2220725 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || | |||||| |||||||||||||| || ||||| ||||||||||| ||||| || | | Sbjct 2220724 TGCGCAATCATGCAATCACGCTCCATCTCTCCGAACCGAAGACCACCGTCGCGCGCACGA 2220665 Query 251551 CCCTCGGCAGGCTGACGAGT 251570 |||||| | ||||| || || Sbjct 2220664 CCCTCGACCGGCTGCCGCGT 2220645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817109700762