Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2 167 2e-36
seq10 95.1 1e-14
seq3 95.1 1e-14
>seq2
Length=4288194
Score = 167 bits (184), Expect = 2e-36
Identities = 1059/1677 (63%), Gaps = 60/1677 (4%)
Strand=Plus/Minus
Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCG--CGGTATTGTTGCAATATTTT 138415
||||||||||| |||||||| || | || |||| ||| || | | ||| || |
Sbjct 3317489 ATCTCCCACACCGTCTTGTACAGGGCCTTGAT--GTCGGCCGGGATGTTGGGAATGTTCT 3317432
Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475
| || ||||| ||||||||||||| || |||||| || ||||| || |
Sbjct 3317431 GGATCGAACCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGT 3317372
Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535
|| || ||| || | ||| | ||| | ||||| || || ||||||| || || |
Sbjct 3317371 CGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCC 3317312
Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595
| ||| |||||| ||| | ||||| || | |||||||| ||||||||||| | ||
Sbjct 3317311 GCGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACG 3317252
Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655
| | ||| |||||||| |||||||| ||| || || | |||||| ||||||
Sbjct 3317251 TCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGAT-- 3317194
Query 138656 GTTC--CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTA 138713
||| | ||||| ||||||||||| || || | || |||||| |||
Sbjct 3317193 CTTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGG 3317134
Query 138714 CTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTA--TACACCAAACTCT 138771
||| | || ||| | ||| ||| || || | | ||| ||| || |||
Sbjct 3317133 CTGCAGAATGCCCTGCGACACAGGAGAGCCCTCATATGTTTGGTAGGTAC-CCTCGATCT 3317075
Query 138772 TGCGCCAACTCGTTGCTCGCCTC---GAGCGCACCATAGTAAATAGTTTCGGCAATCTGC 138828
|| |||| | | || || ||| ||||| | | ||| || || ||| ||||||
Sbjct 3317074 TG-GCCAGCGC---GCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGC 3317019
Query 138829 TGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCG 138888
| || |||| || ||||||| ||| | |||||||| ||| | ||| |||||
Sbjct 3317018 TTGTTCAGCAGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCT 3316959
Query 138889 GCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GC 138947
||||| || ||||| |||| || | || || ||||||| || ||| || || ||
Sbjct 3316958 GCCAGACCCTGCACACCCAGACCAATGGGCCGGTGGCGCA----TGTTGCTGTTTCGTGC 3316903
Query 138948 TTCG---ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004
||| | || || ||||| || || ||||| ||| | || || || |||| ||
Sbjct 3316902 CTCGGGCACGGGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACAACCAACTG 3316843
Query 139005 AGT--CGT-ATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061
|| ||| ||| | || | || || || | | ||| | |||||||| |
Sbjct 3316842 CGTGACGTCGTGC---AGCCGCTGGAAGTCATACGACTCGTTGTTATAGTCGACGA--AC 3316788
Query 139062 GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT 139121
||| | | | | |||||| | ||||||||| ||||| ||||| || |
Sbjct 3316787 GACGGA-------AGAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCCGGCGCCGA 3316735
Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181
||| || ||||| || | |||| || | ||| || || | || | || ||
Sbjct 3316734 GTACTCCACAATCTCCGTGCACAGGTTCGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 3316675
Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGT 139241
||| || ||||| || || ||||| ||||| |||| |||| || ||| || |
Sbjct 3316674 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGC 3316615
Query 139242 CTCTATAATGAATTTGAACAAGTCCCTAG-CTTGTATTTGACGCACG-TAAAGTTCGTCG 139299
||| | |||| | ||| | | | |||| || | ||| | | | |||
Sbjct 3316614 CTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGACCTT--CTTACGACCACGGCCCTCG 3316557
Query 139300 CGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGA 139359
| ||||||||| ||||| || | || || || |||||| || | || ||
Sbjct 3316556 CTCTCGTACTTCTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCCGGCG 3316497
Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419
|||| | || ||||| |||| ||| ||||||| | || || ||| |||||||||||
Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437
Query 139420 TCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTA 139479
|| || ||||| | ||||| | | ||| || || || ||| |||| |||
Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377
Query 139480 CGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539
|| || ||||| ||||| || || |||||||| || |||| |||||| |
Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAG 3316317
Query 139540 GCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596
|| || || |||||||| || || |||| || | | || || || || ||
Sbjct 3316316 GCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGA 3316257
Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA-CTGTTGC 139651
| ||| || | ||| | | ||| |||||||||| ||| ||| ||| | | ||
Sbjct 3316256 AGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGC--CGGCAATGTAGGAGCCGGTG- 3316200
Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711
|| || | | || ||||| | ||||| || ||| | ||||| || | | |
Sbjct 3316199 --GCGCGAATGCGGTGGACATTCAGACCGATGCCACCGGCCGTCTTGGAGATCATGGCAC 3316142
Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770
| || | | || ||||| || || ||||||||||||| ||| || || |||
Sbjct 3316141 ACGTCTTG-AGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAG 3316083
Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830
|| || || || || | | ||||||||| || || || || ||||| |||
Sbjct 3316082 CAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTG 3316023
Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890
|| | | || ||||| | | ||| || |||| ||| | | | ||| || |
Sbjct 3316022 AAGAACTTGTTGGACATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAG 3315963
Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950
||||| || | || ||||| | ||| || || ||| ||| | | | || ||||
Sbjct 3315962 ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGTCGAGC 3315903
Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007
|| || || | ||| ||||||||| |||||||||| |||||||| |||
Sbjct 3315902 TTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCG 3315846
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||||| ||||| || || || || ||||| || || | ||
Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || || || || ||
Sbjct 328508 GACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCAG 328567
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||| || || |||||||||||| | | | | || || || |||
Sbjct 328568 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328627
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| || || || ||| |||| | || |||| || |||
Sbjct 328628 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328675
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || || || |||||| | || || || | |
Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || || ||
Sbjct 328964 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 329023
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| ||||| || || ||| |||| || | | |||| || || |||
Sbjct 329024 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329083
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| ||||| || ||||||||| |||| |||| || ||
Sbjct 329084 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 329130
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || || || |||||| | || || || | |
Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || || ||
Sbjct 328736 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 328795
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||||| || || |||||||||||| | | | | || || || |||
Sbjct 328796 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328855
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| || || || ||| |||| | || |||| || |||
Sbjct 328856 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328903
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | || ||||| ||||| || || || ||||| || || || | |
Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 328280 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 328339
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| || || || ||||||||||| | | | | || || || |||
Sbjct 328340 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 328399
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || |||||||| || || ||| ||||
Sbjct 328400 ATCCAGAAGGAATCCACCCTCCACCTGGT 328428
>seq10
Length=919426
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || || || || ||||| || || || || || |
Sbjct 645085 ACCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 645144
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | || | || || |||||||| ||||| || || || || || ||
Sbjct 645145 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAC 645204
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || ||||||| || || || ||||||||||| | | | |||| || ||
Sbjct 645205 CAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTAC 645264
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
||||| || ||||| || || ||| ||||| |||| | || || ||||
Sbjct 645265 AACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCG 645316
>seq3
Length=3655701
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || ||||| || || || | ||||| | || |
Sbjct 2673775 AAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAAC 2673716
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || || || || || || || ||||||||
Sbjct 2673715 GTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTGATCTTT 2673656
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
||||| || ||||| |||||| | | |||| || || ||||| || ||||| |||
Sbjct 2673655 GCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAGGAGTCG 2673596
Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||| ||||| | || |||| || ||
Sbjct 2673595 ACCCTCCACCTGGTGCTCCGCCTGCGTGGTGG 2673564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897453783280
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