Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 167 2e-36 seq10 95.1 1e-14 seq3 95.1 1e-14 >seq2 Length=4288194 Score = 167 bits (184), Expect = 2e-36 Identities = 1059/1677 (63%), Gaps = 60/1677 (4%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCG--CGGTATTGTTGCAATATTTT 138415 ||||||||||| |||||||| || | || |||| ||| || | | ||| || | Sbjct 3317489 ATCTCCCACACCGTCTTGTACAGGGCCTTGAT--GTCGGCCGGGATGTTGGGAATGTTCT 3317432 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 | || ||||| ||||||||||||| || |||||| || ||||| || | Sbjct 3317431 GGATCGAACCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGT 3317372 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || || ||| || | ||| | ||| | ||||| || || ||||||| || || | Sbjct 3317371 CGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCC 3317312 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | ||| |||||| ||| | ||||| || | |||||||| ||||||||||| | || Sbjct 3317311 GCGAGTAGATGTTGGACGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACG 3317252 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 | | ||| |||||||| |||||||| ||| || || | |||||| |||||| Sbjct 3317251 TCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGAT-- 3317194 Query 138656 GTTC--CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTA 138713 ||| | ||||| ||||||||||| || || | || |||||| ||| Sbjct 3317193 CTTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGG 3317134 Query 138714 CTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTA--TACACCAAACTCT 138771 ||| | || ||| | ||| ||| || || | | ||| ||| || ||| Sbjct 3317133 CTGCAGAATGCCCTGCGACACAGGAGAGCCCTCATATGTTTGGTAGGTAC-CCTCGATCT 3317075 Query 138772 TGCGCCAACTCGTTGCTCGCCTC---GAGCGCACCATAGTAAATAGTTTCGGCAATCTGC 138828 || |||| | | || || ||| ||||| | | ||| || || ||| |||||| Sbjct 3317074 TG-GCCAGCGC---GCACGACTCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGC 3317019 Query 138829 TGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCG 138888 | || |||| || ||||||| ||| | |||||||| ||| | ||| ||||| Sbjct 3317018 TTGTTCAGCAGGCGTGCCTCGGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCT 3316959 Query 138889 GCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG-GC 138947 ||||| || ||||| |||| || | || || ||||||| || ||| || || || Sbjct 3316958 GCCAGACCCTGCACACCCAGACCAATGGGCCGGTGGCGCA----TGTTGCTGTTTCGTGC 3316903 Query 138948 TTCG---ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTT 139004 ||| | || || ||||| || || ||||| ||| | || || || |||| || Sbjct 3316902 CTCGGGCACGGGGTAGTAGTTCACGTCAATGATGCGGTTGAGGTTGCGGACAACCAACTG 3316843 Query 139005 AGT--CGT-ATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 || ||| ||| | || | || || || | | ||| | |||||||| | Sbjct 3316842 CGTGACGTCGTGC---AGCCGCTGGAAGTCATACGACTCGTTGTTATAGTCGACGA--AC 3316788 Query 139062 GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT 139121 ||| | | | | |||||| | ||||||||| ||||| ||||| || | Sbjct 3316787 GACGGA-------AGAGCCAGCGAGGCCAAGTTGCACACGGCCACCTCGTCCGGCGCCGA 3316735 Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181 ||| || ||||| || | |||| || | ||| || || | || | || || Sbjct 3316734 GTACTCCACAATCTCCGTGCACAGGTTCGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 3316675 Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGT 139241 ||| || ||||| || || ||||| ||||| |||| |||| || ||| || | Sbjct 3316674 GCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAACGGGTTGCCCGTCTCCGTCTGCGC 3316615 Query 139242 CTCTATAATGAATTTGAACAAGTCCCTAG-CTTGTATTTGACGCACG-TAAAGTTCGTCG 139299 ||| | |||| | ||| | | | |||| || | ||| | | | ||| Sbjct 3316614 CTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGACCTT--CTTACGACCACGGCCCTCG 3316557 Query 139300 CGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGA 139359 | ||||||||| ||||| || | || || || |||||| || | || || Sbjct 3316556 CTCTCGTACTTCTCGTACAGCGCCTCAAACTCCTCGCCGTAGCAATCCGCCAGGCCGGCG 3316497 Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419 |||| | || ||||| |||| ||| ||||||| | || || ||| ||||||||||| Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437 Query 139420 TCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTA 139479 || || ||||| | ||||| | | ||| || || || ||| |||| ||| Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377 Query 139480 CGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 || || ||||| ||||| || || |||||||| || |||| |||||| | Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAG 3316317 Query 139540 GCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 || || || |||||||| || || |||| || | | || || || || || Sbjct 3316316 GCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGA 3316257 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA-CTGTTGC 139651 | ||| || | ||| | | ||| |||||||||| ||| ||| ||| | | || Sbjct 3316256 AGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGC--CGGCAATGTAGGAGCCGGTG- 3316200 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711 || || | | || ||||| | ||||| || ||| | ||||| || | | | Sbjct 3316199 --GCGCGAATGCGGTGGACATTCAGACCGATGCCACCGGCCGTCTTGGAGATCATGGCAC 3316142 Query 139712 A-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAG 139770 | || | | || ||||| || || ||||||||||||| ||| || || ||| Sbjct 3316141 ACGTCTTG-AGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAG 3316083 Query 139771 CATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTG 139830 || || || || || | | ||||||||| || || || || ||||| ||| Sbjct 3316082 CAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTG 3316023 Query 139831 AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 || | | || ||||| | | ||| || |||| ||| | | | ||| || | Sbjct 3316022 AAGAACTTGTTGGACATGTAGTTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAG 3315963 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtt 139950 ||||| || | || ||||| | ||| || || ||| ||| | | | || |||| Sbjct 3315962 ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGTCGAGC 3315903 Query 139951 tttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 || || || | ||| ||||||||| |||||||||| |||||||| ||| Sbjct 3315902 TTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCG 3315846 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || || ||||| || || | || Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 328508 GACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCAG 328567 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || |||||||||||| | | | | || || || ||| Sbjct 328568 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328627 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| |||| | || |||| || ||| Sbjct 328628 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328675 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || |||||| | || || || | | Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 328964 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 329023 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || || ||| |||| || | | |||| || || ||| Sbjct 329024 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329083 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || ||||||||| |||| |||| || || Sbjct 329084 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 329130 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || || || |||||| | || || || | | Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 328736 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 328795 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || |||||||||||| | | | | || || || ||| Sbjct 328796 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328855 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| |||| | || |||| || ||| Sbjct 328856 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328903 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || ||||| || || || | | Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || ||||| || Sbjct 328280 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 328339 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||||||||| | | | | || || || ||| Sbjct 328340 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 328399 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || ||| |||| Sbjct 328400 ATCCAGAAGGAATCCACCCTCCACCTGGT 328428 >seq10 Length=919426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || ||||| || || || || || | Sbjct 645085 ACCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 645144 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||||| | || | || || |||||||| ||||| || || || || || || Sbjct 645145 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGAC 645204 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| || || || ||||||||||| | | | |||| || || Sbjct 645205 CAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTAC 645264 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| || ||||| || || ||| ||||| |||| | || || |||| Sbjct 645265 AACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCTCCGTGGTGGCG 645316 >seq3 Length=3655701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || ||||| || || || | ||||| | || | Sbjct 2673775 AAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAAC 2673716 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || |||||||| Sbjct 2673715 GTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTGATCTTT 2673656 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| |||||| | | |||| || || ||||| || ||||| ||| Sbjct 2673655 GCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAGGAGTCG 2673596 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| ||||| | || |||| || || Sbjct 2673595 ACCCTCCACCTGGTGCTCCGCCTGCGTGGTGG 2673564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897453783280