Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq10 145 5e-30
seq2 132 3e-26
seq3 123 2e-23
>seq10
Length=919426
Score = 145 bits (160), Expect = 5e-30
Identities = 166/221 (75%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821
|| ||| |||||||| | |||||||||||||| ||||| ||||| || ||| | || |
Sbjct 645303 CCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCC 645244
Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881
|| ||||| ||||| || ||||||||||| || ||||||||| | || | ||||||||
Sbjct 645243 GTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTT 645184
Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937
||| | || || ||||| || | ||||| || | ||| || |||| ||
Sbjct 645183 GTCCTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGG 645128
Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || ||||| |||||||||||||| || ||||||||||||
Sbjct 645127 TGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 645087
>seq2
Length=4288194
Score = 132 bits (146), Expect = 3e-26
Identities = 163/223 (73%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| |||||||| ||||| ||||| || ||| |||| | ||
Sbjct 328431 AGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 328372
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || |||||||| || || |||||||| | || | |||||||||||
Sbjct 328371 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 328312
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | |||||| |||| || ||||||
Sbjct 328311 TGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTC 328252
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGACT 34988
|| || ||||| ||||| || || ||||||||||| | ||||
Sbjct 328251 TTGCCGGTGAGCGTCTTGACGAAAATCTGCATGATGGGCGACT 328209
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | || ||||||||| ||||| |||||||| ||| |||| ||||
Sbjct 328887 AGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 328828
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || || |||||||| || ||||||||| |||| | |||||||||||
Sbjct 328827 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCT 328768
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | |||| || | ||| || || | || || |||
Sbjct 328767 TGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTC 328708
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| ||||| | |||||| |||||||| ||||||
Sbjct 328707 TTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328675
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | || ||||||||| ||||| |||||||| ||| |||| ||||
Sbjct 328659 AGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 328600
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| || || |||||||| || ||||||||| |||| | |||||||||||
Sbjct 328599 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 328540
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||||| | |||| || | |||||| || | || ||||||
Sbjct 328539 TGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 328480
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| || |||||||||||
Sbjct 328479 TTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 107 bits (118), Expect = 1e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | || ||||||||||||||| ||||| || || | || | ||
Sbjct 329116 CAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCCGTC 329057
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| ||||| || || || ||||| || ||||||||| |||| | |||||||||||
Sbjct 329056 TTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 328997
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | |||| || | ||| || || | || || ||
Sbjct 328996 TTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGT 328937
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||| ||||| | |||||| |||||||| ||||||
Sbjct 328936 CTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | || ||||||||| ||||| ||||| || || | || | ||
Sbjct 329344 CAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTC 329285
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|||| ||||| || || || ||||| || ||||||||| |||| | |||||||||||
Sbjct 329284 TTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTC 329225
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || || || || || | || || ||
Sbjct 329224 CTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGT 329165
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| |||||||| || || ||||||||
Sbjct 329164 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
>seq3
Length=3655701
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 2673579 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCC 2673638
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| |||||||| || |||||||| |||| | |||||||||||
Sbjct 2673639 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2673698
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || || |||||| || | ||| ||||||
Sbjct 2673699 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 2673758
Query 34946 TTTCCCGTGAGGGTCTTTACAAA 34968
|| |||||||||||||| || ||
Sbjct 2673759 TTGCCCGTGAGGGTCTTCACGAA 2673781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692696796094
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |