Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 7e-16 seq2 89.7 3e-13 >seq10 Length=919426 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || |||||||| || || |||||||| ||||| || || || |||| || Sbjct 645297 CACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTC 645238 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || || || |||| |||||||| ||| | || | || || ||||| Sbjct 645237 CAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 645178 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | ||| ||| | ||||||| || ||||| |||| ||||| || | Sbjct 645177 GATCTTGGACTTGA-CATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCT 645119 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || || | || || || ||||||||||| |||| Sbjct 645118 TGCCCGTGAGGGTCTTGACGAAGATCTGCATGGTTG 645083 >seq2 Length=4288194 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || ||||| ||||| | || |||| || || || ||||| Sbjct 328639 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 328580 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT-CTGTTTCAACA 33676 |||| |||||||| ||| |||| | || || ||||| ||| || || || ||| Sbjct 328579 GATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG--ACA 328522 Query 33677 TAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 | ||| | |||||| || || || || | ||||| || || || || | ||| || Sbjct 328521 TTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTG 328462 Query 33736 ACAAAGATCTGCATA 33750 || |||||||||||| Sbjct 328461 ACGAAGATCTGCATA 328447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703895841920