Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq10 98.7 7e-16
seq2 89.7 3e-13
>seq10
Length=919426
Score = 98.7 bits (108), Expect = 7e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599
||||| || || |||||||| || || |||||||| ||||| || || || |||| ||
Sbjct 645297 CACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTC 645238
Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659
|| || || || || || |||| |||||||| ||| | || | || || |||||
Sbjct 645237 CAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 645178
Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718
|| || || | ||| ||| | ||||||| || ||||| |||| ||||| || |
Sbjct 645177 GATCTTGGACTTGA-CATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCT 645119
Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754
| || || | || || || ||||||||||| ||||
Sbjct 645118 TGCCCGTGAGGGTCTTGACGAAGATCTGCATGGTTG 645083
>seq2
Length=4288194
Score = 89.7 bits (98), Expect = 3e-13
Identities = 139/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||| || ||||| ||||| | || |||| || || || |||||
Sbjct 328639 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 328580
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT-CTGTTTCAACA 33676
|||| |||||||| ||| |||| | || || ||||| ||| || || || |||
Sbjct 328579 GATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG--ACA 328522
Query 33677 TAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735
| ||| | |||||| || || || || | ||||| || || || || | ||| ||
Sbjct 328521 TTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTG 328462
Query 33736 ACAAAGATCTGCATA 33750
|| ||||||||||||
Sbjct 328461 ACGAAGATCTGCATA 328447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703895841920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |