Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 199 4e-46 seq1 104 2e-17 >seq2 Length=4288194 Score = 199 bits (220), Expect = 4e-46 Identities = 982/1535 (64%), Gaps = 35/1535 (2%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCT-GAGATACACATTGCTAGTGAAAGG 146951 |||||||| || |||||||| ||||||||||| | ||| || | ||| ||| | || Sbjct 3317345 TTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAG-TAGATGTTGGACGTGTATGG 3317287 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| || ||||| | || || | ||| | || || ||||| |||||| Sbjct 3317286 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCAC 3317227 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 || || || |||| ||||| | | ||| || | || | | ||||||||| Sbjct 3317226 CAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCA 3317167 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGA 147129 || |||||||||||||| |||||||||| ||| || | || |||| | ||| Sbjct 3317166 CAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGCGACA--CAGGA 3317109 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA-GCTTGCCTCGAG 147188 ||| | | || |||| | || ||| || |||| | || | | | || || Sbjct 3317108 GAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTC-AG 3317050 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||| | | ||| ||||| ||| ||| || ||||| || | | || || ||| Sbjct 3317049 CGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTC 3316990 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | ||||| ||||| || ||||| || |||| |||||| | ||| | || || || Sbjct 3316989 AAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGG 3316930 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGC-TCGCT-ATGGGATAGTGGTTGCGATCAATA 147366 || || ||||||| |||| || ||| | ||| |||| ||| ||||| Sbjct 3316929 CCGGTGGCGCATGTTGCTGT--TTCGTGCCTCGGGCACGGGGTAGTAGTTCACGTCAATG 3316872 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCATA 147425 || ||||||||| || || || | | || | || || || || ||| ||||| Sbjct 3316871 ATGCGGTTGAGGTTGCGGACAACCAACTGCGTGAC-GTCGTGCAGCCGCTGGAAGTCATA 3316813 Query 147426 AGTCCCGTC-TTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | | ||| || | || ||| | | || | || |||| ||||| |||| Sbjct 3316812 CGACTCGTTGTTATAGTCG-ACGAACGACGGAAGAGCCAGCGAGGCCAAGTTGCACACGG 3316754 Query 147485 CCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATTTT 147540 || ||| || |||| || ||||| ||| || || | ||||||||| ||||| | Sbjct 3316753 CCACCTCGTCCGGCGCCGA-GTACTCCACAATCTCCGTGCACAGGTTCGAGCTGCGGATG 3316695 Query 147541 ATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTAC 147600 || |||| || | ||| ||||| || || ||||| ||| ||| |||||||| || Sbjct 3316694 GTG---CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAC 3316638 Query 147601 GGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAGGTCCTGCGCTCGCAC 147659 || ||| ||||| |||| || | || | || ||| | ||| || || Sbjct 3316637 GGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGG-CGTACCACAGCTTCTGGGCCTTGAC 3316579 Query 147660 CCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCC 147719 | || ||| ||||||||| | |||||| |||||||| | ||||||||| ||||| Sbjct 3316578 CTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTCCTCGCC 3316519 Query 147720 GTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGC 147779 ||||||||| || ||||||| |||| || || |||||||||| |||| | ||| | Sbjct 3316518 GTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGT 3316459 Query 147780 GTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTT 147839 | || || ||| |||||||| || | ||| || ||| | |||||| || || Sbjct 3316458 CTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACG 3316399 Query 147840 GCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCA 147899 | ||||| ||| ||| || | || | | ||| ||||||||||| Sbjct 3316398 GACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCA 3316339 Query 147900 GGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCG 147956 || || | ||||| | | ||||| ||| || || |||||||| || | ||| Sbjct 3316338 CGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCG 3316279 Query 147957 CACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGA 148016 || |||||||||| || || | ||| || | |||| | | |||||||||||| Sbjct 3316278 GGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCC 3316219 Query 148017 ATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGT 148075 || | | |||| ||| || | ||| || || | || ||||| || ||||| Sbjct 3316218 GGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGATGCCACCGGCCGT 3316159 Query 148076 ACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133 ||| || || || ||| || | | || ||||||||| || |||||||||| Sbjct 3316158 -CTTGGAGAT--CATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTC 3316102 Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || || ||| ||| || | |||| || || ||| || Sbjct 3316101 CTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAGAG 3316042 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || ||||| || || || || | ||| | || ||||| | | || Sbjct 3316041 CGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTCTCGACAACGCG 3315982 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 || | ||||| || || || | || || ||||||| ||||||||| || || || Sbjct 3315981 CTCCACATCGTCACCCCAGATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTC 3315922 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 | ||| | | || || |||||| || || || ||||| ||| | |||||||| Sbjct 3315921 GACAATCTTACCGTCGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTA 3315862 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | ||| | || || | ||||| | ||||||| Sbjct 3315861 TTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCG 3315827 >seq1 Length=5014741 Score = 104 bits (114), Expect = 2e-17 Identities = 340/519 (66%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGAT---CGAGAGCGAGACC 46814 || || ||| | ||||| |||||| |||||||| || ||||| ||| | ||| || Sbjct 1638351 GTCCCCTGCATCCGCAAGAAGGCCGAGTGGGCCCTGCGCTGGATTTCCGACAAGGAGTCC 1638410 Query 46815 GCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGC 46874 || | || ||||| | |||||||| || ||||| ||| | || || ||| Sbjct 1638411 ACCT---TTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGC 1638467 Query 46875 AGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGT 46934 || | |||| || | | || | ||| | ||||| || ||||| ||| Sbjct 1638468 GCCTTCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCC 1638527 Query 46935 AACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT-CTATTACAA 46993 || ||| |||| || |||||||| || || ||||| |||||||| || || || || Sbjct 1638528 AATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCT-- 1638585 Query 46994 GACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGGT 47053 | | | |||| | | | | | | |||| | ||| | || || || Sbjct 1638586 --CCCACCTGAACAACCGCCCGAGCAAGCAGATCATCCAGGACATTATCGTCGATGCCGT 1638643 Query 47054 GAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG- 47112 | || || |||||||||| || | ||| |||||| || | ||||||||||||| Sbjct 1638644 CAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCCCTGTGCTCTTCTGGGCATGAACGC 1638703 Query 47113 CACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGAC 47172 ||| || ||| | || |||||||| || || || |||||| |||| ||||| | Sbjct 1638704 CACCCTC-ATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCGCTCTCGG-C 1638761 Query 47173 AACCGAAATATTTTAATGCTC--GTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGA 47230 || ||| | | || |||| ||||| ||||| |||||| | ||||| || || | Sbjct 1638762 AA-CGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGG 1638820 Query 47231 GGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||||| ||||| || |||||||| || ||||| || || Sbjct 1638821 CGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1638859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611045101360