Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq10 149 6e-31
seq2 147 2e-30
seq3 91.5 1e-13
>seq10
Length=919426
Score = 149 bits (164), Expect = 6e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | || || ||||| || | ||| |||||||| || |||||||| |||| |
Sbjct 645314 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 645255
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || |||| ||||||||||| || || || |||| ||||||||||| | |||
Sbjct 645254 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 645195
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | |||||| ||| ||||||
Sbjct 645194 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 645135
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||| | || || || || ||||||||
Sbjct 645134 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq2
Length=4288194
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | || |||||| || | ||| |||||| ||||||||||| |||| |
Sbjct 329130 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 329071
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| |||| |||||| |||||||| |||| ||||||||||| | ||
Sbjct 329070 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGG 329011
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || ||||||||| |||||| ||| | |||| | | |||||| ||| || ||
Sbjct 329010 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAAC 328952
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||| ||||| || |||||||| || || ||||| || |||||
Sbjct 328951 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
Score = 129 bits (142), Expect = 5e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || |||| |||| |||||| ||||||||
Sbjct 329323 CTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAA 329264
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | |||| || |||||||||| |||||| ||| | ||
Sbjct 329263 AATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 329205
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| |||||||| |||| ||| ||||| || ||||||| || || |
Sbjct 329204 TGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGA 329145
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 329144 CGAAAATCTGCAT 329132
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||| || | |||| |||||| || |||||||| || |
Sbjct 328902 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328843
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||||||||| || ||||| |||| ||||||||||| | ||
Sbjct 328842 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 328783
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688
| || ||||||||| |||||| ||| | |||| | | |||||| ||| || ||
Sbjct 328782 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAAC 328724
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||| ||||| || |||||||| || || ||||| || |||||
Sbjct 328723 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||| || | |||| |||||| || |||||||| || |
Sbjct 328674 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328615
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || ||||||||||| || ||||| |||| ||||||||||| | |||
Sbjct 328614 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGA 328555
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| ||||| ||| | | | | | ||||||| ||| || |||
Sbjct 328554 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACC 328495
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || || || | || || || || ||||||||
Sbjct 328494 TCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||| | ||| || |||| ||||||||||| || || ||
Sbjct 328410 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 328351
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||||||||| | |||| || |||||||||| |||||| ||| | |||
Sbjct 328350 ATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 328292
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | || || || || ||||| | |||||| || || || || | || || ||
Sbjct 328291 GTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGAC 328232
Query 35725 AAATATCTGCATTCTGTGCG 35744
|| |||||||| || |||
Sbjct 328231 GAAAATCTGCATGATGGGCG 328212
>seq3
Length=3655701
Score = 91.5 bits (100), Expect = 1e-13
Identities = 132/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || || || | || || |||||||| || |||||
Sbjct 2673599 CTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAA 2673658
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | || | || |||||||||| |||||| ||| | ||
Sbjct 2673659 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 2673717
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| || || ||||| | ||||| || || ||||| | || ||||
Sbjct 2673718 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCA 2673777
Query 35724 CAAA 35727
| ||
Sbjct 2673778 CGAA 2673781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793453492080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |