Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq10 122 9e-23 seq3 104 2e-17 >seq2 Length=4288194 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| ||||| || ||||| || ||||||||||| | |||| | || || Sbjct 328656 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328597 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || || || ||| Sbjct 328596 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 328537 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||||||||| || || |||||||| ||||| || Sbjct 328536 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 328477 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| || ||||| Sbjct 328476 CCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 Score = 131 bits (144), Expect = 2e-25 Identities = 610/955 (64%), Gaps = 19/955 (2%) Strand=Plus/Plus Query 7654 TTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCG 7713 || || ||||| ||||| || | || ||| ||||| | | |||| |||| || Sbjct 3316021 TTCACACACGCCTCGCCGACGCTCTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCC 3316080 Query 7714 TGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGAT 7773 || || | | |||| || |||||||| || ||||| ||| ||||||| | || Sbjct 3316081 TGCTTCCTCGTGGACATGAAGGACGACAGCATTGAGGGCATCTACGACACGCT-CAAGAC 3316139 Query 7774 -TGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCG 7831 || |||| || ||||| ||||| || || || |||||||| || || | | |||| Sbjct 3316140 GTGTGCCATGATCTCCAAG-ACGGCCGGTGGCATCGGTCTGAATGTCCACCGCATTCGCG 3316198 Query 7832 CCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGC 7891 ||| ||| | ||| | ||||||||| | | ||| ||| | || ||| | | Sbjct 3316199 CCACCGGCTCCTACATTGCCGGCACCAACGGCACATCCAACGGCATCATCCCTATGCTTC 3316258 Query 7892 GCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCG 7948 | || || || ||| ||| || | || |||||||| || || |||| || ||| Sbjct 3316259 GTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGGTGGCAACAAGCGCCCCGGTGCCT 3316318 Query 7949 -CTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGC 8007 |||| ||||| ||||||||||||||||| || | | | | || | ||||| Sbjct 3316319 TCTGC-ATCTACTTGGAGCCGTGGCACGCCGATGTCTTTGAGTTCCTGGACCTGCGGAAG 3316377 Query 8008 AACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGAT 8067 ||| |||| || || | || || ||||| ||| ||| | ||| | |||||| Sbjct 3316378 AACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTTTTCCTCGCTCTCTGGATCCCCGAT 3316437 Query 8068 CTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGC 8127 ||||| |||| ||| || | | ||| | ||| |||| ||||||||| || ||| Sbjct 3316438 CTGTTCATGAAGCGTGTGGAGACCAACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGC 3316497 Query 8128 CCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACAC 8187 | | | ||||| | ||||| ||||| | | ||||| | Sbjct 3316498 GCCGGCCTGGCGGATTGCTACGGCGAGGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGC 3316557 Query 8188 GACGG-CGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATG 8246 || || || | ||| | | || || || | | ||| ||||||| | || Sbjct 3316558 GAGGGCCGTGGTCGT-AAGAAGGTCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGC 3316616 Query 8247 TCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAA 8306 || | || || || | |||| |||||| ||||| ||| |||||| ||| ||||| Sbjct 3316617 GCAGACGGAGACGGGCAACCCGTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAA 3316676 Query 8307 TCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAG 8366 || | ||| |||||||||| | || || |||||| | || ||||| ||||| Sbjct 3316677 CCAGAAGAACCTGGGCACCATCCGCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTC 3316736 Query 8367 CGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGA 8426 ||||| ||||| |||||||| ||||| | || ||| || | | | ||||| Sbjct 3316737 GGCGCCGGACGAGGTGGCCGTGTGCAACTTGGCCTCGCTGGCTCT----TCCGTCGTTCG 3316792 Query 8427 TCGACGCT--CAA--ACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGG 8482 ||||| | ||| | | || ||||| | | || | ||| | ||| || | Sbjct 3316793 TCGACTATAACAACGAGTCGTATGACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTG 3316852 Query 8483 TACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTAT 8542 | ||||| | | ||||||||||| || || | || ||| || || || || Sbjct 3316853 TCCGCAACCTCAACCGCATCATTGACGTGAACTACTACCCCGTGCCCGAGGCACGAAACA 3316912 Query 8543 CGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTT 8597 |||||||||||| | ||| |||| |||| ||||| |||||||| ||||| || Sbjct 3316913 GCAACATGCGCCACCGGCCCATTGGTCTGGGTGTGCAGGGTCTGGCAGACGCCTT 3316967 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| ||||| || ||||| ||||||||||||||| | || | Sbjct 329121 AGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGG 329062 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| |||||||||| |||||||| || ||||| ||||| || Sbjct 329061 CCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 329002 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || || ||||| ||| | ||||| ||||| || || || | ||| Sbjct 329001 TTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTA 328942 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || || |||||||| Sbjct 328941 ATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | || | Sbjct 329349 AGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGG 329290 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| |||||||||| |||||||| || ||||| ||||| || Sbjct 329289 CCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCC 329230 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || |||||||| || || ||| Sbjct 329229 TTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTA 329170 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || |||||||| ||||| Sbjct 329169 ATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || ||||||||||| || |||||||||||| Sbjct 328446 CCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 328387 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || || | ||||||||| ||||| || Sbjct 328386 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGA 328327 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | || || || || || || Sbjct 328326 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACC 328267 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || |||||||| ||||| Sbjct 328266 TCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| ||||| || ||||| || ||||||||||| | |||| | || || Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || || ||||| Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||| ||||| || || || | ||||| || || Sbjct 328764 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328705 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || |||||||| Sbjct 328704 CCCGTCAAGGTCTTGACAAAGATTTGCAT 328676 >seq10 Length=919426 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| ||||| |||||| ||||| || |||||||||||| Sbjct 645314 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 645255 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| |||||||| || |||| |||||||| || || || Sbjct 645254 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 645195 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||||||||| ||||| Sbjct 645194 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 645135 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 645134 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088 >seq3 Length=3655701 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || |||||||||||| | || | Sbjct 2673573 AGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGG 2673632 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 2673633 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCC 2673692 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || || || || ||||| || Sbjct 2673693 TTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTG 2673752 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 ||||| || || || | || || |||||| Sbjct 2673753 ATGGTCTTGCCCGTGAGGGTCTTCACGAAA 2673782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398235745520