Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 4e-27
seq1 89.7 2e-12
>seq2
Length=4288194
Score = 138 bits (152), Expect = 4e-27
Identities = 369/549 (67%), Gaps = 30/549 (5%)
Strand=Plus/Plus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
|||||| || || ||| | ||||| || |||||| ||| |||||||| || || || ||
Sbjct 3316239 CGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGGTGG 3316298
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087
| ||| ||||| || || ||| ||||||| ||||||||||||||||||| | ||||
Sbjct 3316299 CAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGATGTCTTTGA 3316358
Query 255088 ACGGTTTTTACTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATC 255145
||| | ||| || | ||| || | |||||| | ||||| || |
Sbjct 3316359 ---GTTCCTGGACCTG--CGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTT 3316413
Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGA--GACGAGACC 255202
| | |||| ||||| | ||||||||| ||| || ||||| || | | ||||
Sbjct 3316414 TTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAG--- 3316470
Query 255203 TGGAGCCTCATGTGTCCCAACTTATCGC-CCGGTCTAGTCGACTCTTGGGGTGACGAGTT 255261
|||| || ||||| ||||| | | || |||| || | || | | || || |||||
Sbjct 3316471 TGGACGCTGATGTGCCCCAA-TGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAGGAGTT 3316529
Query 255262 TGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGT----ACGCCAAGTGCCC 255316
||| ||||| | |||||||| | | ||||| | |||| | | |||| ||||
Sbjct 3316530 TGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAGGTCAAG-GCCC 3316588
Query 255317 GCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTA 255376
||||| | ||| || | || || |||| ||| || || | |||||| |
Sbjct 3316589 ----AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATG 3316644
Query 255377 TTGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGG 255435
| |||| |||||| || |||| | | ||||| ||| || || || ||| |
Sbjct 3316645 CTCTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCAG 3316703
Query 255436 CTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAA 255495
||||||||||||||| |||||| | | || || | || | ||||||||||| |||||
Sbjct 3316704 CTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGCAA 3316763
Query 255496 CTTGGCGTC 255504
|||||| ||
Sbjct 3316764 CTTGGCCTC 3316772
>seq1
Length=5014741
Score = 89.7 bits (98), Expect = 2e-12
Identities = 117/161 (73%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766
|||| || || || ||||||| ||||| || | || || |||||| || || | |||
Sbjct 1638421 AGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGC-GCCTTCTCGTCC 1638479
Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826
||||||||| | || |||||||| || |||| |||||||| || || || |||||
Sbjct 1638480 ATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATT 1638539
Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867
|| |||||||| |||| |||||| ||||| || ||
Sbjct 1638540 TCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCT 1638580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588335470885570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |