Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 138 4e-27 seq1 89.7 2e-12 >seq2 Length=4288194 Score = 138 bits (152), Expect = 4e-27 Identities = 369/549 (67%), Gaps = 30/549 (5%) Strand=Plus/Plus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | ||||| || |||||| ||| |||||||| || || || || Sbjct 3316239 CGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGGTGG 3316298 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087 | ||| ||||| || || ||| ||||||| ||||||||||||||||||| | |||| Sbjct 3316299 CAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGATGTCTTTGA 3316358 Query 255088 ACGGTTTTTACTGCTGTCCGACAAGACC--GGCACCGAGGAGCTGATCGCCCGCGACATC 255145 ||| | ||| || | ||| || | |||||| | ||||| || | Sbjct 3316359 ---GTTCCTGGACCTG--CGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTT 3316413 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGA--GACGAGACC 255202 | | |||| ||||| | ||||||||| ||| || ||||| || | | |||| Sbjct 3316414 TTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAG--- 3316470 Query 255203 TGGAGCCTCATGTGTCCCAACTTATCGC-CCGGTCTAGTCGACTCTTGGGGTGACGAGTT 255261 |||| || ||||| ||||| | | || |||| || | || | | || || ||||| Sbjct 3316471 TGGACGCTGATGTGCCCCAA-TGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAGGAGTT 3316529 Query 255262 TGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGT----ACGCCAAGTGCCC 255316 ||| ||||| | |||||||| | | ||||| | |||| | | |||| |||| Sbjct 3316530 TGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAGGTCAAG-GCCC 3316588 Query 255317 GCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTA 255376 ||||| | ||| || | || || |||| ||| || || | |||||| | Sbjct 3316589 ----AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATG 3316644 Query 255377 TTGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGG 255435 | |||| |||||| || |||| | | ||||| ||| || || || ||| | Sbjct 3316645 CTCTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGCACCATCCGCAG 3316703 Query 255436 CTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAA 255495 ||||||||||||||| |||||| | | || || | || | ||||||||||| ||||| Sbjct 3316704 CTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGCAA 3316763 Query 255496 CTTGGCGTC 255504 |||||| || Sbjct 3316764 CTTGGCCTC 3316772 >seq1 Length=5014741 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 443707 AGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCC 443766 |||| || || || ||||||| ||||| || | || || |||||| || || | ||| Sbjct 1638421 AGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGC-GCCTTCTCGTCC 1638479 Query 443767 ATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATC 443826 ||||||||| | || |||||||| || |||| |||||||| || || || ||||| Sbjct 1638480 ATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATT 1638539 Query 443827 AGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 || |||||||| |||| |||||| ||||| || || Sbjct 1638540 TCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCT 1638580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335470885570