Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 1e-28
>seq2
Length=4288194
Score = 141 bits (156), Expect = 1e-28
Identities = 986/1564 (63%), Gaps = 59/1564 (4%)
Strand=Plus/Minus
Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAG 110610
|||||| || | ||||| | | || |||||||| ||||| | || | ||| |
Sbjct 3317463 CTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCG 3317404
Query 110611 ATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTT 110670
| |||||| | | ||||| ||||| || | ||||| |||| || | |||
Sbjct 3317403 GTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTT 3317344
Query 110671 GACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTC 110730
||| | ||||| || || || | | | ||||||||| | |||||||| ||
Sbjct 3317343 GACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTC 3317284
Query 110731 AAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAA 110790
||||| || || || |||| || || | || || || || ||||| || |||| ||
Sbjct 3317283 GAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAG 3317224
Query 110791 AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC--CTTGAGAACATCCCAGTCGTA- 110847
|||||||| || | ||| | ||||||||| ||| | || |||||||| |
Sbjct 3317223 CAGACTGTTGCGCACACCGTGCTCCTTGATC--TTCAGCCGCAGCGAGTCCCAGTCCCAC 3317166
Query 110848 --GTT-GAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904
|| ||| || |||| | |||||||||| ||| || | || || ||| | ||
Sbjct 3317165 AGGTCCGAG---GGCGTCACGT-CCCACATGTCGGGCTGCAGAATGCCCTGCGACACAGG 3317110
Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 110964
||| |||||| | |||| |||| ||| | | | |||| | || | || |||
Sbjct 3317109 AGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTCAG 3317050
Query 110965 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 111024
| ||||| || ||||| || ||||| | |||| | || || || ||
Sbjct 3317049 CGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTC 3316990
Query 111025 AAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079
||| |||| |||| || || | || || ||||| || ||||||| ||||
Sbjct 3316989 AAAGGGCATGCGCAGCGCCAGGAAGG-----CGTCTGCCAGACCCTGCACACCCAGACCA 3316935
Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTG 111136
|| || | ||| ||||| || ||||| || ||| ||||| || | || |
Sbjct 3316934 ATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC---CTCGGGCACGGGGTAGTAGTTCACG 3316878
Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196
||||||| ||||| || || | ||| | || |||| || || || | |
Sbjct 3316877 TCAATGATGCGGTTGAGGTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCGCTGGAAG 3316818
Query 111197 TCAAAAGTGCGAGTCTCT----TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252
||| | ||| || | | | ||| || ||||| || | || ||||| ||
Sbjct 3316817 TCATA----CGACTCGTTGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCCAAGTT 3316762
Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312
||| || ||| ||| ||| | | |||||| | ||| || || || | ||| || ||
Sbjct 3316761 GCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGCT 3316702
Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372
|| || |||| ||||| ||||| ||||| |||||| ||||||||||||||
Sbjct 3316701 GCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCAT 3316642
Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTG 111431
| | || | |||||||||||||| | | ||||| || | ||| | | || | | ||
Sbjct 3316641 GAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTT 3316582
Query 111432 GTACAATGGCGTTGG--CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489
| || | | | | | || ||||| ||||||||| ||| || || ||||||||
Sbjct 3316581 G-ACCTT--CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTC 3316525
Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAGAAAAGAGACCATTGAC 111548
||| || || | || || || || || | || || | || | ||| | |
Sbjct 3316524 CTCGCCGTAGCAATCCGCCAGGCC-GGCGCACTCATTGGGGCACATCAGCGTCCACTCGC 3316466
Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAGATC 111606
| ||| || ||||||||||| || || || |||| | || || |||| |||||
Sbjct 3316465 CGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA--AGATC 3316408
Query 111607 TC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665
| ||| || |||| || | ||| ||||| || | || |||||||| | || ||
Sbjct 3316407 ACGGGCACGGA-CCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACAT 3316349
Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATCC----CTTTCGACGCCCAGCTTG 111720
| |||||||| ||||| | |||| ||| || | || | | | | ||| | ||
Sbjct 3316348 CGGCGTGCCACGGCTCCAAGTAGA-TGCAGAAGGCACCGGGGCGCTTGTTG-CCACCCTG 3316291
Query 111721 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 111780
| || ||||| || ||| |||||| || |||||||| || || || || | |||
Sbjct 3316290 GTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGT 3316231
Query 111781 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840
|| || || || ||| || |||| | | |||| | || || ||
Sbjct 3316230 GCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGAT 3316171
Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900
|| || ||| ||| ||||| |||||| | | || || | ||||| || | ||
Sbjct 3316170 GCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAAT 3316111
Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 111960
||| ||||| || | | |||||||| |||| ||| | || || || ||
Sbjct 3316110 GCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGC 3316051
Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 112019
|||||||| || || | ||||| |||| | || | | |||||| | || ||||||||
Sbjct 3316050 GTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTATGTCT 3315992
Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079
| | || || | || || || ||| || | || || ||||||| ||||| ||
Sbjct 3315991 CGACAACGCGCTCCACATCGTCACCCCAGATACCAACGGCCACACGCATGATCATGTGCT 3315932
Query 112080 GTGG 112083
| ||
Sbjct 3315931 GCGG 3315928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031795889600
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