Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-28 >seq2 Length=4288194 Score = 141 bits (156), Expect = 1e-28 Identities = 986/1564 (63%), Gaps = 59/1564 (4%) Strand=Plus/Minus Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAG 110610 |||||| || | ||||| | | || |||||||| ||||| | || | ||| | Sbjct 3317463 CTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCG 3317404 Query 110611 ATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTT 110670 | |||||| | | ||||| ||||| || | ||||| |||| || | ||| Sbjct 3317403 GTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTT 3317344 Query 110671 GACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTC 110730 ||| | ||||| || || || | | | ||||||||| | |||||||| || Sbjct 3317343 GACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTC 3317284 Query 110731 AAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAA 110790 ||||| || || || |||| || || | || || || || ||||| || |||| || Sbjct 3317283 GAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAG 3317224 Query 110791 AAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC--CTTGAGAACATCCCAGTCGTA- 110847 |||||||| || | ||| | ||||||||| ||| | || |||||||| | Sbjct 3317223 CAGACTGTTGCGCACACCGTGCTCCTTGATC--TTCAGCCGCAGCGAGTCCCAGTCCCAC 3317166 Query 110848 --GTT-GAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 || ||| || |||| | |||||||||| ||| || | || || ||| | || Sbjct 3317165 AGGTCCGAG---GGCGTCACGT-CCCACATGTCGGGCTGCAGAATGCCCTGCGACACAGG 3317110 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 110964 ||| |||||| | |||| |||| ||| | | | |||| | || | || ||| Sbjct 3317109 AGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTCAG 3317050 Query 110965 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 111024 | ||||| || ||||| || ||||| | |||| | || || || || Sbjct 3317049 CGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTC 3316990 Query 111025 AAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||| |||| |||| || || | || || ||||| || ||||||| |||| Sbjct 3316989 AAAGGGCATGCGCAGCGCCAGGAAGG-----CGTCTGCCAGACCCTGCACACCCAGACCA 3316935 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTG 111136 || || | ||| ||||| || ||||| || ||| ||||| || | || | Sbjct 3316934 ATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC---CTCGGGCACGGGGTAGTAGTTCACG 3316878 Query 111137 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 111196 ||||||| ||||| || || | ||| | || |||| || || || | | Sbjct 3316877 TCAATGATGCGGTTGAGGTTGCGGACAACCAACTGCGTGACGTCGTGCAGCCGCTGGAAG 3316818 Query 111197 TCAAAAGTGCGAGTCTCT----TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 ||| | ||| || | | | ||| || ||||| || | || ||||| || Sbjct 3316817 TCATA----CGACTCGTTGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCCAAGTT 3316762 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||| || ||| ||| ||| | | |||||| | ||| || || || | ||| || || Sbjct 3316761 GCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGAGCT 3316702 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || |||| ||||| ||||| ||||| |||||| |||||||||||||| Sbjct 3316701 GCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCAT 3316642 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTG 111431 | | || | |||||||||||||| | | ||||| || | ||| | | || | | || Sbjct 3316641 GAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTT 3316582 Query 111432 GTACAATGGCGTTGG--CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 | || | | | | | || ||||| ||||||||| ||| || || |||||||| Sbjct 3316581 G-ACCTT--CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTC 3316525 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAGAAAAGAGACCATTGAC 111548 ||| || || | || || || || || | || || | || | ||| | | Sbjct 3316524 CTCGCCGTAGCAATCCGCCAGGCC-GGCGCACTCATTGGGGCACATCAGCGTCCACTCGC 3316466 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAGATC 111606 | ||| || ||||||||||| || || || |||| | || || |||| ||||| Sbjct 3316465 CGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAA--AGATC 3316408 Query 111607 TC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 | ||| || |||| || | ||| ||||| || | || |||||||| | || || Sbjct 3316407 ACGGGCACGGA-CCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACAT 3316349 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGC-GATAGATCC----CTTTCGACGCCCAGCTTG 111720 | |||||||| ||||| | |||| ||| || | || | | | | ||| | || Sbjct 3316348 CGGCGTGCCACGGCTCCAAGTAGA-TGCAGAAGGCACCGGGGCGCTTGTTG-CCACCCTG 3316291 Query 111721 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 111780 | || ||||| || ||| |||||| || |||||||| || || || || | ||| Sbjct 3316290 GTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGT 3316231 Query 111781 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840 || || || || ||| || |||| | | |||| | || || || Sbjct 3316230 GCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGCGGTGGACATTCAGACCGAT 3316171 Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900 || || ||| ||| ||||| |||||| | | || || | ||||| || | || Sbjct 3316170 GCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAAT 3316111 Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 111960 ||| ||||| || | | |||||||| |||| ||| | || || || || Sbjct 3316110 GCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCGGC 3316051 Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 112019 |||||||| || || | ||||| |||| | || | | |||||| | || |||||||| Sbjct 3316050 GTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTATGTCT 3315992 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079 | | || || | || || || ||| || | || || ||||||| ||||| || Sbjct 3315991 CGACAACGCGCTCCACATCGTCACCCCAGATACCAACGGCCACACGCATGATCATGTGCT 3315932 Query 112080 GTGG 112083 | || Sbjct 3315931 GCGG 3315928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031795889600