Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 172 7e-38 >seq2 Length=4288194 Score = 172 bits (190), Expect = 7e-38 Identities = 1067/1686 (63%), Gaps = 53/1686 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| ||| |||||||| | | ||||| | Sbjct 3317651 CGCAGGTAGTACATGCCCGTCTTGAGGCCCAGCTTCCAGCCCGTGAAGTGCATGCTTGTG 3317592 Query 117897 AACTTGGAGAGGGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955 | |||| | ||| || || | |||| || ||||| || || || ||||| || Sbjct 3317591 ATCTTGCCCATGGTCGG-CTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAA 3317533 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 118012 | || || || || ||||| | |||| | || || ||| |||||||| || Sbjct 3317532 GGCACCACGGTCTGCAGCCATCTG---CACAATCGTCCGCTGCGAGATCTCCCACACCGT 3317476 Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072 | |||| ||| ||| || || | ||||| | || || ||||| || || | | Sbjct 3317475 CTTGTACAGGGCCTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTC 3317416 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 | | ||| | | |||||| | | ||||| ||||| || | || |||| | Sbjct 3317415 CGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAG 3317356 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 || | ||||| || ||||| || || || || | | ||||| |||| Sbjct 3317355 CAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGA 3317296 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 |||||||||||| |||||||| ||||| |||| || || | || || || || ||||| Sbjct 3317295 CGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCAT 3317236 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC--CTTGAGAGCG 118310 || |||| || || ||||| || | ||| | ||| | || ||| | || | | Sbjct 3317235 CGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC--TTCAGCCGCAGCGAG 3317178 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||||| | | | | | | | | |||||| || ||| || || || || Sbjct 3317177 TCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGC 3317118 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430 ||| | || || |||||| |||| | || | ||||| | || |||| || | | Sbjct 3317117 GACACAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGAC 3317058 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT-GCCTTGGCCTC 118489 || || || ||||| || || || || || || | |||| | | || |||| Sbjct 3317057 TCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTG-CCTC 3316999 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 | || ||||| | | || | | || | || || ||||| || ||||| || Sbjct 3316998 GGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAG 3316939 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATT 118606 ||||| || || || | ||| || || || || ||| |||||| || | || Sbjct 3316938 ACCAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC---CTCGGGCACGGGGTAGTAGTT 3316882 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACC---TTTGTGATTTCATGAAGCTT 118663 | || || | | || || || | ||||||| | |||| || || ||| Sbjct 3316881 CACGTCAATGATGCGGTTGAGGTT---GCGGACAACCAACTGCGTGACGTCGTGCAGCCG 3316825 Query 118664 TTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 118721 | | | ||| | ||| || | | | | ||| || ||||| || | || ||| Sbjct 3316824 CTGGAAGTCATACGACT-CGT-TGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCC 3316767 Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781 | || ||||| | ||| ||| | | |||||| | ||| |||||||||| ||| Sbjct 3316766 AAGTTGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTC 3316707 Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAA 118841 || || |||||||||| |||||| || || ||| ||| || |||||||| Sbjct 3316706 GAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAG 3316647 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGC 118900 |||||| | || | ||||||||||| || | || ||||| || | ||| | | || | Sbjct 3316646 AGCATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGG 3316587 Query 118901 AGCTGGCACAGTGGCGTTGG--CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 || | || | | | | | || ||||| ||||||||| ||| || || ||| Sbjct 3316586 GCCTTG-ACCTT--CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCA 3316530 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC-CTTATCTGGGCAGAAGAGAGACCA 119017 ||||| || || | || | || || || || || || ||||| | || | ||| Sbjct 3316529 AACTCCTCGCCGTAGCAATCCGCCAGGCC-GGCGCACTCATTGGGGCACATCAGCGTCCA 3316471 Query 119018 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 119077 | || ||| || ||||||||||| || || ||||||||||| || ||| || Sbjct 3316470 CTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 3316411 Query 119078 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137 ||| || || | || || | ||||| || |||| |||| || || | || Sbjct 3316410 ATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGAC 3316351 Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGACGACCAGC 119191 ||| ||||||||||| |||| ||| | || | || ||| | | ||| | Sbjct 3316350 ATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTT--GTTG-CCACC 3316294 Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251 ||||| || || | || ||| |||||| ||||||||||| || ||||| || | ||| Sbjct 3316293 CTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGA 3316234 Query 119252 TTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309 | ||| || || || ||| | ||| | |||| | | ||||| | || | Sbjct 3316233 TGTGCCGTTGGTGCCGGCAATGTAGGAGCCGG--TGGCGCGAATGCGGTGGACATTCAGA 3316176 Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 || || || || ||| ||| ||||| || ||| | |||| || ||||||| || Sbjct 3316175 CCGATGCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCC 3316116 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429 || || ||| |||| | | | |||||||||| |||| |||| | ||| || Sbjct 3316115 TCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTG 3316056 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTA 119488 || ||||||||||| || || | ||||| |||| | || | | |||||| | || ||| Sbjct 3316055 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTA 3315997 Query 119489 GGTCTC 119494 ||||| Sbjct 3315996 TGTCTC 3315991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434999008560