Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 7e-38
>seq2
Length=4288194
Score = 172 bits (190), Expect = 7e-38
Identities = 1067/1686 (63%), Gaps = 53/1686 (3%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| ||||||||||| ||| |||||||| | | ||||| |
Sbjct 3317651 CGCAGGTAGTACATGCCCGTCTTGAGGCCCAGCTTCCAGCCCGTGAAGTGCATGCTTGTG 3317592
Query 117897 AACTTGGAGAGGGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 117955
| |||| | ||| || || | |||| || ||||| || || || ||||| ||
Sbjct 3317591 ATCTTGCCCATGGTCGG-CTCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAA 3317533
Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGT 118012
| || || || || ||||| | |||| | || || ||| |||||||| ||
Sbjct 3317532 GGCACCACGGTCTGCAGCCATCTG---CACAATCGTCCGCTGCGAGATCTCCCACACCGT 3317476
Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072
| |||| ||| ||| || || | ||||| | || || ||||| || || | |
Sbjct 3317475 CTTGTACAGGGCCTTGATGTCGGCCGGGATGTTGGGAATGTTCTGGATCGAACCGTTCTC 3317416
Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132
| | ||| | | |||||| | | ||||| ||||| || | || |||| |
Sbjct 3317415 CGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAG 3317356
Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192
|| | ||||| || ||||| || || || || | | ||||| ||||
Sbjct 3317355 CAGCCACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGA 3317296
Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252
|||||||||||| |||||||| ||||| |||| || || | || || || || |||||
Sbjct 3317295 CGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCAT 3317236
Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC--CTTGAGAGCG 118310
|| |||| || || ||||| || | ||| | ||| | || ||| | || | |
Sbjct 3317235 CGGCGCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATC--TTCAGCCGCAGCGAG 3317178
Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370
|||||||| | | | | | | | | |||||| || ||| || || || ||
Sbjct 3317177 TCCCAGTCCCACAGGTCCGAGGGCGTCACGTCCCACATGTCGGGCTGCAGAATGCCCTGC 3317118
Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430
||| | || || |||||| |||| | || | ||||| | || |||| || | |
Sbjct 3317117 GACACAGGAGAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGAC 3317058
Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATT-GCCTTGGCCTC 118489
|| || || ||||| || || || || || || | |||| | | || ||||
Sbjct 3317057 TCCGTCAGCGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTG-CCTC 3316999
Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549
| || ||||| | | || | | || | || || ||||| || ||||| ||
Sbjct 3316998 GGGCGACTCAAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAG 3316939
Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATT 118606
||||| || || || | ||| || || || || ||| |||||| || | ||
Sbjct 3316938 ACCAATGGGCCGGTGGCGCATGTTGCTGTTTCGTGC---CTCGGGCACGGGGTAGTAGTT 3316882
Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACC---TTTGTGATTTCATGAAGCTT 118663
| || || | | || || || | ||||||| | |||| || || |||
Sbjct 3316881 CACGTCAATGATGCGGTTGAGGTT---GCGGACAACCAACTGCGTGACGTCGTGCAGCCG 3316825
Query 118664 TTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 118721
| | | ||| | ||| || | | | | ||| || ||||| || | || |||
Sbjct 3316824 CTGGAAGTCATACGACT-CGT-TGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCC 3316767
Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781
| || ||||| | ||| ||| | | |||||| | ||| |||||||||| |||
Sbjct 3316766 AAGTTGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTC 3316707
Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAA 118841
|| || |||||||||| |||||| || || ||| ||| || ||||||||
Sbjct 3316706 GAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAG 3316647
Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGC 118900
|||||| | || | ||||||||||| || | || ||||| || | ||| | | || |
Sbjct 3316646 AGCATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGG 3316587
Query 118901 AGCTGGCACAGTGGCGTTGG--CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958
|| | || | | | | | || ||||| ||||||||| ||| || || |||
Sbjct 3316586 GCCTTG-ACCTT--CTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCA 3316530
Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC-CTTATCTGGGCAGAAGAGAGACCA 119017
||||| || || | || | || || || || || || ||||| | || | |||
Sbjct 3316529 AACTCCTCGCCGTAGCAATCCGCCAGGCC-GGCGCACTCATTGGGGCACATCAGCGTCCA 3316471
Query 119018 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 119077
| || ||| || ||||||||||| || || ||||||||||| || ||| ||
Sbjct 3316470 CTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAG 3316411
Query 119078 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 119137
||| || || | || || | ||||| || |||| |||| || || | ||
Sbjct 3316410 ATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGAC 3316351
Query 119138 ATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACGACGACCAGC 119191
||| ||||||||||| |||| ||| | || | || ||| | | ||| |
Sbjct 3316350 ATCGGCGTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTT--GTTG-CCACC 3316294
Query 119192 CTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGA 119251
||||| || || | || ||| |||||| ||||||||||| || ||||| || | |||
Sbjct 3316293 CTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGA 3316234
Query 119252 TTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATA 119309
| ||| || || || ||| | ||| | |||| | | ||||| | || |
Sbjct 3316233 TGTGCCGTTGGTGCCGGCAATGTAGGAGCCGG--TGGCGCGAATGCGGTGGACATTCAGA 3316176
Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369
|| || || || ||| ||| ||||| || ||| | |||| || ||||||| ||
Sbjct 3316175 CCGATGCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCC 3316116
Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429
|| || ||| |||| | | | |||||||||| |||| |||| | ||| ||
Sbjct 3316115 TCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTG 3316056
Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTA 119488
|| ||||||||||| || || | ||||| |||| | || | | |||||| | || |||
Sbjct 3316055 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGA-ACTTGTTGGACATGTAGTTGTA 3315997
Query 119489 GGTCTC 119494
|||||
Sbjct 3315996 TGTCTC 3315991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434999008560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |