Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 163 3e-35 seq1 95.1 1e-14 >seq2 Length=4288194 Score = 163 bits (180), Expect = 3e-35 Identities = 891/1399 (64%), Gaps = 43/1399 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| |||||| | ||||| || || || | || || Sbjct 3315928 CCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTT 3315987 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||||||| || | |||||| | | || | |||| ||||| | || || ||||| Sbjct 3315988 GTCGAGACATACAACTACATGTCCAACAAGT-TCTTCACACACGCCTCGCCGACGCTCTT 3316046 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || |||| |||||||| | | || ||||| || Sbjct 3316047 CAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGA 3316106 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || ||||| | || || | | |||||| ||||| ||| ||| || Sbjct 3316107 CAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGG 3316166 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 || || || || | |||| | | |||| || ||| || || || Sbjct 3316167 TGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAA 3316226 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| | || || || || |||||||| || |||||| ||| || ||||| || Sbjct 3316227 CGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGT 3316286 Query 104581 AAATCAAGCTGGGCGTCGAAAG----GGATCTATC-GCAGTCTATCTTGAGCCATGGCAC 104635 | || | ||| | | | | || | || ||| |||| | ||||| |||||| Sbjct 3316287 GGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTCTGCA-TCTACTTGGAGCCGTGGCAC 3316344 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || ||| || | |||||||| || |||| ||||| ||| | ||||||| || | Sbjct 3316345 GCCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCC 3316404 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || ||||| ||| |||||||||||| || ||||| ||||||||| | || ||| | Sbjct 3316405 CGTGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAAC 3316464 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAG-GCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 ||| | ||| | || | || || | || || || || || | ||| | || || Sbjct 3316465 GGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCC-GGCCTGGCGGATTGCTACGGCGA 3316523 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874 ||||||||| || || ||| ||||||||| || || || | | || ||| | Sbjct 3316524 GGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAGGT-CA 3316582 Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 || | || | ||||| | || ||||| || | || || ||||| || | || | || Sbjct 3316583 AGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCA 3316642 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| ||| ||| |||| ||||| || || ||||| |||| ||| | Sbjct 3316643 TGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCA 3316702 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 | || || || || || || || |||| | | | || ||| ||| ||||| | Sbjct 3316703 GCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGCA 3316762 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTTGATTA 105111 || | || || | ||||| || || || || | | | |||| || | | ||| | Sbjct 3316763 ACTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGA-CTATA-ACAACGAGTCGTATGACTT 3316820 Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171 | || ||||| || ||| | || | ||||| ||| | | ||||| Sbjct 3316821 CCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCATTGACGT 3316880 Query 105172 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || | |||||||| ||| || || || || ||| | ||||| || ||||| Sbjct 3316881 GAACTACTACCCCGTGCCCGAG---GCACGAAACAGCAACATGCGCCACCGGCCCATTGG 3316937 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TTTGAT 105283 ||| ||||| |||||||| || || | ||| || ||| |||| ||||| Sbjct 3316938 TCTGGGTGTGCAGGGTCTGGCAGACGCCTTC-----CTGGCGCTGCGCATGCCCTTTGAG 3316992 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || ||| || | || || || || |||||||| || ||||| || | | Sbjct 3316993 TCGCCCGAGGCACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGCGGCGC-T 3317051 Query 105344 GAGGCGAGT--TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 || | |||| | | | |||| || | || ||| | || |||| | |||||| |||| Sbjct 3317052 GACG-GAGTCGTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCTCTC 3317110 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTAC 105460 | | || || || | || || || ||||||| | |||| | || | | | Sbjct 3317111 CTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGG-ACGTGACGCCCTCGGACCTGTGG 3317169 Query 105461 GACTGGGAAGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||||||| | || | ||| ||||||||| | ||| | || |||||||| || Sbjct 3317170 GACTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGTCTGCTGG 3317227 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 |||| || ||||| || || || || | || || |||| || || || ||||| || | Sbjct 3317228 TGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGC 3317287 Query 105579 CCTACACGACGAACATCTA 105597 | |||||| | |||||||| Sbjct 3317288 CATACACGTCCAACATCTA 3317306 >seq1 Length=5014741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| |||| ||| | |||||||| || ||||| || |||||| || ||| Sbjct 1638412 CCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCT 1638471 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||| | || | |||||||||||||| || || ||||| ||||| |||||||| | Sbjct 1638472 TCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATG 1638531 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| || || || |||||||| || ||| || ||||| Sbjct 1638532 AGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGC 1638571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260610440240