Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 163 3e-35
seq1 95.1 1e-14
>seq2
Length=4288194
Score = 163 bits (180), Expect = 3e-35
Identities = 891/1399 (64%), Gaps = 43/1399 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| |||||| | ||||| || || || | || ||
Sbjct 3315928 CCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTT 3315987
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||||||| || | |||||| | | || | |||| ||||| | || || |||||
Sbjct 3315988 GTCGAGACATACAACTACATGTCCAACAAGT-TCTTCACACACGCCTCGCCGACGCTCTT 3316046
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||| || || || || | || |||| |||||||| | | || ||||| ||
Sbjct 3316047 CAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGA 3316106
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
| || | || ||||| | || || | | |||||| ||||| ||| ||| ||
Sbjct 3316107 CAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGG 3316166
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|| || || || | |||| | | |||| || ||| || || ||
Sbjct 3316167 TGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAA 3316226
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
|| ||| | || || || || |||||||| || |||||| ||| || ||||| ||
Sbjct 3316227 CGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGT 3316286
Query 104581 AAATCAAGCTGGGCGTCGAAAG----GGATCTATC-GCAGTCTATCTTGAGCCATGGCAC 104635
| || | ||| | | | | || | || ||| |||| | ||||| ||||||
Sbjct 3316287 GGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTCTGCA-TCTACTTGGAGCCGTGGCAC 3316344
Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695
|| ||| || | |||||||| || |||| ||||| ||| | ||||||| || |
Sbjct 3316345 GCCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCC 3316404
Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755
|| ||||| ||| |||||||||||| || ||||| ||||||||| | || ||| |
Sbjct 3316405 CGTGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAAC 3316464
Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAG-GCACCTGGTCTCTCCGATGCCGTGGGTGA 104814
||| | ||| | || | || || | || || || || || | ||| | || ||
Sbjct 3316465 GGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCC-GGCCTGGCGGATTGCTACGGCGA 3316523
Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874
||||||||| || || ||| ||||||||| || || || | | || ||| |
Sbjct 3316524 GGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAGGT-CA 3316582
Query 104875 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933
|| | || | ||||| | || ||||| || | || || ||||| || | || | ||
Sbjct 3316583 AGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCA 3316642
Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993
|||| ||||| ||| ||| |||| ||||| || || ||||| |||| ||| |
Sbjct 3316643 TGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCA 3316702
Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053
| || || || || || || || |||| | | | || ||| ||| ||||| |
Sbjct 3316703 GCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGCA 3316762
Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTTGATTA 105111
|| | || || | ||||| || || || || | | | |||| || | | ||| |
Sbjct 3316763 ACTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGA-CTATA-ACAACGAGTCGTATGACTT 3316820
Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171
| || ||||| || ||| | || | ||||| ||| | | |||||
Sbjct 3316821 CCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCATTGACGT 3316880
Query 105172 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228
|| | |||||||| ||| || || || || ||| | ||||| || |||||
Sbjct 3316881 GAACTACTACCCCGTGCCCGAG---GCACGAAACAGCAACATGCGCCACCGGCCCATTGG 3316937
Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TTTGAT 105283
||| ||||| |||||||| || || | ||| || ||| |||| |||||
Sbjct 3316938 TCTGGGTGTGCAGGGTCTGGCAGACGCCTTC-----CTGGCGCTGCGCATGCCCTTTGAG 3316992
Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343
|| ||| || | || || || || |||||||| || ||||| || | |
Sbjct 3316993 TCGCCCGAGGCACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGCGGCGC-T 3317051
Query 105344 GAGGCGAGT--TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401
|| | |||| | | | |||| || | || ||| | || |||| | |||||| ||||
Sbjct 3317052 GACG-GAGTCGTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCTCTC 3317110
Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTAC 105460
| | || || || | || || || ||||||| | |||| | || | | |
Sbjct 3317111 CTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGG-ACGTGACGCCCTCGGACCTGTGG 3317169
Query 105461 GACTGGGAAGCTCTCAAG--GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518
|||||||| | || | ||| ||||||||| | ||| | || |||||||| ||
Sbjct 3317170 GACTGGGACTCGCTGCGGCTGAA--GATCAAGGAGCACGGTGTGCGCAACAGTCTGCTGG 3317227
Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578
|||| || ||||| || || || || | || || |||| || || || ||||| || |
Sbjct 3317228 TGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGC 3317287
Query 105579 CCTACACGACGAACATCTA 105597
| |||||| | ||||||||
Sbjct 3317288 CATACACGTCCAACATCTA 3317306
>seq1
Length=5014741
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855
||||||| |||| ||| | |||||||| || ||||| || |||||| || |||
Sbjct 1638412 CCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCT 1638471
Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915
||| | || | |||||||||||||| || || ||||| ||||| |||||||| |
Sbjct 1638472 TCTCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATG 1638531
Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||| || || || |||||||| || ||| || |||||
Sbjct 1638532 AGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGC 1638571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260610440240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |