Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 4e-32
seq3 89.7 2e-12
>seq2
Length=4288194
Score = 154 bits (170), Expect = 4e-32
Identities = 439/669 (66%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324
|| || || ||||| || |||||| | || ||||| || | ||| || || || || ||
Sbjct 3554641 ATCATCGCCAATGACCAGGGTAACCGCACCACGCCGTCCTTCGTGGCCTTCACGGACACG 3554700
Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384
||||| |||||||||| | || || || || | || || || | || || ||
Sbjct 3554701 GAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGTC 3554760
Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATC 349442
|| || || ||||| || ||||| | | ||| | || | | | || | | |||
Sbjct 3554761 TTCGACGCCAAGCGGCTCATTGGCCGCAAGTTTGCCGATGCTGAGGTGCA--AGCGGATA 3554818
Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTG 349502
| || || ||||| || | | | || | ||| | || || || ||| | ||||| |
Sbjct 3554819 TGAAGCACTTTCCCTTCAA-GATCATCGACAAGGC--TGGCAAGCCCATTGTCGAGGTCG 3554875
Query 349503 AATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562
| | || || || | || || || ||||| |||||||| || ||||| | |
Sbjct 3554876 AGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGACCA 3554935
Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622
| ||| || | ||||| | || | |||| || || | | ||||| || ||||
Sbjct 3554936 AGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCACTG 3554995
Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682
| || ||||| || || || | |||||| || || || || || || |||||| |
Sbjct 3554996 TCCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCG 3555055
Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742
| | || || || | || || || || ||||| || || || ||||| || || || |
Sbjct 3555056 GTCTGAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTACGGTCTCG 3555115
Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802
| || | | || || || | || || ||||| | ||||| |||||||| |
Sbjct 3555116 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGTACTTTCG 3555175
Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862
|||| || || || || |||| ||||| || || || || || | ||||||||||| |
Sbjct 3555176 ATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTGGTGACA 3555235
Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922
| || | ||||| || || ||||| || |||||||| || ||||| || || || |
Sbjct 3555236 CTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCAACGAGTTCA 3555295
Query 349923 AGCGTCAAG 349931
|||| ||||
Sbjct 3555296 AGCG-CAAG 3555303
Score = 131 bits (144), Expect = 5e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | ||||| || || || |||||||| || || || || |
Sbjct 328682 TTTGCATGCCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGT 328623
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || ||||||||||| || || ||||| |
Sbjct 328622 AGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 328563
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || |||||||| || ||| || ||||| || |||| || ||
Sbjct 328562 CTGGCGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGAC 328504
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || | ||||| ||||| || || || || || ||||||||
Sbjct 328503 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || || || || || || || || ||
Sbjct 328450 CATACCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 328391
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || || || || || ||||| ||||| ||||| ||||| || ||
Sbjct 328390 GGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGG 328331
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| || || | || || || ||||| | ||| || | ||
Sbjct 328330 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTC 328271
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| ||||| || || || || |||||||||||
Sbjct 328270 GACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220
Score = 113 bits (124), Expect = 1e-19
Identities = 168/236 (71%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | | ||||| || || || |||||||| || || || || |
Sbjct 328910 TTTGCATGCCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGT 328851
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| || || || || ||||||||||| || || ||||| |
Sbjct 328850 AGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 328791
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || || || || || || || || || || ||| || || || ||||||| || ||
Sbjct 328790 CTGGCGGGATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCAATCGTGTCCGAC 328732
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || | |||| ||||| || || | || || ||||| || |||||
Sbjct 328731 GACTCAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Score = 104 bits (114), Expect = 7e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || || || ||||| || || || || || || || | || || || |||
Sbjct 329343 AGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCT 329284
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| | || || || ||||| || || || ||||| || || ||||| || || || |||
Sbjct 329283 TCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 329224
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || | || || || ||||| | || || | ||| ||||| || |||| |||
Sbjct 329223 TGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTC 329164
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || || |||||||||||
Sbjct 329163 TTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 91.5 bits (100), Expect = 4e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || ||||| || ||||| || || ||
Sbjct 329134 CATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 329075
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || ||||| | || || || ||||| || || || ||||| || ||
Sbjct 329074 GGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGG 329015
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
|| || || || || || || || || ||| || || || ||||||| || || | |
Sbjct 329014 CGGGATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCAATCGTGTCCGACGACT 328956
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| || | |||| ||||| || || | || || ||||| || |||||
Sbjct 328955 CAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
>seq3
Length=3655701
Score = 89.7 bits (98), Expect = 2e-12
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 2673561 ATACCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2673620
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| || || || || || |||||||| || || ||||| |||||
Sbjct 2673621 GACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGC 2673680
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || ||| || || || || || | || || | ||
Sbjct 2673681 GGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCCGAGGACTC 2673739
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736
|| || || || | ||||| || || || || || || ||| |||||
Sbjct 2673740 GACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253895230878
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