Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 154 4e-32 seq3 89.7 2e-12 >seq2 Length=4288194 Score = 154 bits (170), Expect = 4e-32 Identities = 439/669 (66%), Gaps = 8/669 (1%) Strand=Plus/Plus Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || |||||| | || ||||| || | ||| || || || || || Sbjct 3554641 ATCATCGCCAATGACCAGGGTAACCGCACCACGCCGTCCTTCGTGGCCTTCACGGACACG 3554700 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 ||||| |||||||||| | || || || || | || || || | || || || Sbjct 3554701 GAGCGGTTGATTGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGTC 3554760 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTGATC 349442 || || || ||||| || ||||| | | ||| | || | | | || | | ||| Sbjct 3554761 TTCGACGCCAAGCGGCTCATTGGCCGCAAGTTTGCCGATGCTGAGGTGCA--AGCGGATA 3554818 Query 349443 TAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTG 349502 | || || ||||| || | | | || | ||| | || || || ||| | ||||| | Sbjct 3554819 TGAAGCACTTTCCCTTCAA-GATCATCGACAAGGC--TGGCAAGCCCATTGTCGAGGTCG 3554875 Query 349503 AATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | | || || || | || || || ||||| |||||||| || ||||| | | Sbjct 3554876 AGTTCAAGGGCGAGAAGAAGCAGTTCACCCCCGAGGAAATTTCCTCCATGGTCCTGACCA 3554935 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| | || | |||| || || | | ||||| || |||| Sbjct 3554936 AGATGCGCGAGACCGCTGAGTCCTACCTCGGTGGCACCGTCAACAACGCTGTCATCACTG 3554995 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || || || || |||||| | Sbjct 3554996 TCCCGGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCG 3555055 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || || || || ||||| || || || ||||| || || || | Sbjct 3555056 GTCTGAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTACGGTCTCG 3555115 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | || || || | || || ||||| | ||||| |||||||| | Sbjct 3555116 ACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGTACTTTCG 3555175 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || || |||| ||||| || || || || || | ||||||||||| | Sbjct 3555176 ATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTGGTGACA 3555235 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || | ||||| || || ||||| || |||||||| || ||||| || || || | Sbjct 3555236 CTCACTTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCAACGAGTTCA 3555295 Query 349923 AGCGTCAAG 349931 |||| |||| Sbjct 3555296 AGCG-CAAG 3555303 Score = 131 bits (144), Expect = 5e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||| || || || |||||||| || || || || | Sbjct 328682 TTTGCATGCCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGT 328623 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||||||||| || || ||||| | Sbjct 328622 AGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 328563 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| || || || |||||||| || ||| || ||||| || |||| || || Sbjct 328562 CTGGCGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGAC 328504 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| ||||| || || || || || |||||||| Sbjct 328503 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || || || || || || || || || Sbjct 328450 CATACCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 328391 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| ||||| ||||| ||||| || || Sbjct 328390 GGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGG 328331 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || ||||| | ||| || | || Sbjct 328330 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTC 328271 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || ||||||||||| Sbjct 328270 GACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220 Score = 113 bits (124), Expect = 1e-19 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | | ||||| || || || |||||||| || || || || | Sbjct 328910 TTTGCATGCCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGT 328851 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||||||||| || || ||||| | Sbjct 328850 AGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGT 328791 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || || || || || || || || || || ||| || || || ||||||| || || Sbjct 328790 CTGGCGGGATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCAATCGTGTCCGAC 328732 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || | |||| ||||| || || | || || ||||| || ||||| Sbjct 328731 GACTCAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676 Score = 104 bits (114), Expect = 7e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || || || | || || || ||| Sbjct 329343 AGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCT 329284 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || || ||||| || || || ||||| || || ||||| || || || ||| Sbjct 329283 TCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 329224 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || || || ||||| | || || | ||| ||||| || |||| ||| Sbjct 329223 TGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTC 329164 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || ||||||||||| Sbjct 329163 TTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 91.5 bits (100), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || ||||| || || || Sbjct 329134 CATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 329075 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| | || || || ||||| || || || ||||| || || Sbjct 329074 GGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGG 329015 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || || || || || || || || ||| || || || ||||||| || || | | Sbjct 329014 CGGGATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACGTTGTCAATCGTGTCCGACGACT 328956 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || | |||| ||||| || || | || || ||||| || ||||| Sbjct 328955 CAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904 >seq3 Length=3655701 Score = 89.7 bits (98), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 2673561 ATACCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2673620 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || |||||||| || || ||||| ||||| Sbjct 2673621 GACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGC 2673680 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || ||| || || || || || | || || | || Sbjct 2673681 GGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTGTCCGAGGACTC 2673739 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || || | ||||| || || || || || || ||| ||||| Sbjct 2673740 GACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253895230878