Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 338 7e-88
seq1 145 8e-30
>seq2
Length=4288194
Score = 338 bits (374), Expect = 7e-88
Identities = 540/764 (71%), Gaps = 12/764 (2%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACA-CGCGT-GTCCGTGAGACGT 53249
||||||| || ||| | |||||| |||||||| | | ||||| ||| ||||| |
Sbjct 3315941 TCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTTGTC---GAGACAT 3315997
Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|| ||| ||| | | |||| ||| || |||||| |||| || || |||||||| || |
Sbjct 3315998 ACAACTACATGTCCAACAAGTTCTTCACACACGCCTCGCCGACGCTCTTCAACGCCGGCA 3316057
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
|| || ||||| |||| ||||||||| |||| |||||||| ||| || || |
Sbjct 3316058 CGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGACAGCATTGAGG 3316117
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
|||||||||| ||||||||| ||||||| ||||||||| | | ||||| ||||||
Sbjct 3316118 GCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGTC 3316177
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
| | || || | || | || || | |||| | || || || |||||| |
Sbjct 3316178 TGAA-TG-TCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAACGGCACATC 3316235
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || ||| | |||||||| || ||||| |||||||||||||| ||||| |||||||
Sbjct 3316236 CAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGG 3316295
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| |||||| || | ||| ||||||| | ||||||||||||||||| | |
Sbjct 3316296 TGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGATGTCTT 3316355
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
||||| || || ||||| ||| |||||| | || ||| | || |||||| || ||
Sbjct 3316356 TGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTTTT 3316415
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
||||| ||||| || || || |||||| | ||||||| ||| ||||||
Sbjct 3316416 CCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAGTGGAC 3316475
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787
||||||||||| || |||||| ||||||| || | |||||| ||||||||| | |
Sbjct 3316476 GCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAGGAGTTTGAGGC 3316535
Query 53788 GATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846
| |||| || ||||| || | ||||||| |||||||||||||| | ||
Sbjct 3316536 GCTGTACGAGAAGTACG-AGAGCGAGGGCCGTGGTCGTAAGAAGGTCAAGGCCCAGAAGC 3316594
Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906
| ||| | || || || || ||| ||||||||| | |||| |||| ||||||||
Sbjct 3316595 TGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATGCTCTACAAGG 3316654
Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950
| |||| |||||||||||||||||| | ||| ||||
Sbjct 3316655 ACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 3316698
Score = 147 bits (162), Expect = 2e-30
Identities = 551/843 (65%), Gaps = 42/843 (5%)
Strand=Plus/Plus
Query 55108 GCTTCACGAAGTGACGCGTGTTG--TGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165
||| ||||| || |||| |||| || | || ||||| ||||| |||| ||| |||
Sbjct 3316827 GCTGCACGACGTCACGCA-GTTGGTTGTC-CGCAACCTCAACCGCATCATTGACGTGAAC 3316884
Query 55166 TACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATC 55222
|||||||| | | || ||| || || |||| | || ||||||||||| | |
Sbjct 3316885 TACTACCCCGTGCCCGA---GGCACGAAACAGCAACATGCGCCACCGGCCCATTGGTCTG 3316941
Query 55223 GGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCGGAACCT 55282
||||| ||||| |||| ||| |||| || ||| | ||||||| || |||
Sbjct 3316942 GGTGTGCAGGGTCTGGCAGACGCCTTCCTGGCGCTGCGCATGCCCTTTGAGTCGCCCGAG 3317001
Query 55283 GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC 55341
|| || | ||| || | |||||| || | ||||||| || ||||| ||||||
Sbjct 3317002 GCACGCCTGCTGAACAAGCAGATCTTCGAGAC-CATCTACCACGCGGCGCTGACGGAGTC 3317060
Query 55342 GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACA- 55400
||| ||||| | || |||||| |||||| | || | | || || | || |
Sbjct 3317061 GTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCTCTCCTG-TGTCGC 3317119
Query 55401 AGGGACTTCTCCAGTTCGATCTATGGGGCAAG------TCTGACCCCATG---TTTGACA 55451
|||| |||| ||| ||| | |||| | | || |||| | | |||
Sbjct 3317120 AGGGCATTCTGCAGCCCGACATGTGGGACGTGACGCCCTCGGACCTGTGGGACTGGGACT 3317179
Query 55452 AGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGC 55511
| || || | || | | || | |||||| ||||| |||||||| ||||
Sbjct 3317180 CGCTGCGGCTGAAGATCAAGGAGCACGGTGTGCGCAACAGTCTGCTGGTGGCGCCGATGC 3317239
Query 55512 CAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCA 55571
| || ||||||||| | ||||| |||||||||||||| |||||||| |||||| |||
Sbjct 3317240 CGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACGTCCA 3317299
Query 55572 ACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCA 55631
|||||||| ||| || || || || ||||| || ||||| | || |||
Sbjct 3317300 ACATCTACTCGCGGCGTGTGCTGGCCGGCGAGTTCCAGGTGGTCAACCCGTGGCTGCTCA 3317359
Query 55632 AGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGA 55688
|||||||| | || |||| | || |||| || || |||| | ||
Sbjct 3317360 AGGACCTGGTCGACATGGGTCTGTGGTCGGACAACATGAAGAACCGCATCATTGCGGAGA 3317419
Query 55689 ACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGG 55744
|| || || ||||||| || | | ||| || | |||||| | ||| |
Sbjct 3317420 AC---GGTTCGATCCAGAACATTCCCAACA-TCCCGGCCGACATCAAGGCCCTGTACAAG 3317475
Query 55745 ACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGAGTGCTGATCGTGGTGCG 55801
|||||||||||||| | ||| || ||||| | ||| ||| || ||||||||
Sbjct 3317476 ACGGTGTGGGAGATCTCGCAGCGGA---CGATTGTGCAGATGGCTGCAGACCGTGGTGCC 3317532
Query 55802 TACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTG 55861
| ||||||||||| ||||| ||||||||| |||| | || | ||| |||| |
Sbjct 3317533 TTTATCGACCAGTCGCAGTCGCTGAACATCCACATGCGTGAGCCGACCATGGGCAAGATC 3317592
Query 55862 AGCTCGATGCACTTTTACGGG-TGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920
| |||||| || ||||| |||||| ||| ||||||||||| |||||||| |||||
Sbjct 3317593 ACAAGCATGCAC-TTCACGGGCTGGAAGCTGGGCCTCAAGACGGGCATGTACTACCTGCG 3317651
Query 55921 GAC 55923
||
Sbjct 3317652 CAC 3317654
>seq1
Length=5014741
Score = 145 bits (160), Expect = 8e-30
Identities = 306/452 (68%), Gaps = 6/452 (1%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| || ||||| || |||| | ||| || || |||||| |||||
Sbjct 3459888 CCAGTACCGATACCATCGGCACCGTTGATCAAGACCATGGGGACAACAGGAGCGTAGTTG 3459829
Query 117212 TCAGGCTCCACC-TGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGG 117270
| ||||| | ||| | || || || || || || || || | | || |||
Sbjct 3459828 ACCGGCTCAATGATGCTGCCC-TCATCAATGTTGTTCTCCAGGACGGGCTCATCCAGCGG 3459770
Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330
| ||| | | || |||| | || | |||||||||||||||| ||| |||||
Sbjct 3459769 GTGGAACACGCGTCGGGCAAACGGAGACAGTCTCGTGAAAATGTAACGAGCGCTGGCAGC 3459710
Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390
||| ||||| | |||||| | ||| || | || || ||||| | | ||| | ||
Sbjct 3459709 ATCGGCACCACCGGAAAGACGAGAACCAAAGTTACCGCTAGGCTCGAGGCAGTTGACATT 3459650
Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450
||||| || |||||||| || || | ||||| || || || || |||||
Sbjct 3459649 GTTGGAACCAACAAAGTTCTGGGCAAGACCCACAATGGTCTGGTGCAGCGAAGCATCACC 3459590
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--T 117508
||||| || |||| | ||| | |||| |||| |||| || | ||||||| ||| |
Sbjct 3459589 GTGGTGGTAAGCCGCCAGCTTGGACACGGAGCCAGCCAACTCAAACACCTTCTGGTCCTT 3459530
Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568
||| | ||||||||| || |||| || || ||||||||||||| ||||| |||||
Sbjct 3459529 GACA--ATGTTCTTCTTCAGACAGGTGTAGATAACCTTGCGCTGACCCGGCTTGAGACCG 3459472
Query 117569 TCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
|| ||| ||||| |||||| || ||||
Sbjct 3459471 TCAATAACGGAGGGGATAGAACGCATGTTGTC 3459440
Score = 141 bits (156), Expect = 1e-28
Identities = 303/450 (67%), Gaps = 2/450 (0%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| |||||||| || || |||||||||| || | ||| || |||| ||| |||||
Sbjct 3459888 CCAGTACCGATACCATCGGCACCGTTGATCAAGACCATGGGGACAACAGGAGCGTAGTTG 3459829
Query 151936 TCCGGCTCCACC-TGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994
||||||| | || || || ||||| || || | || |||| | || |||
Sbjct 3459828 ACCGGCTCAATGATGCTGCCC-TCATCAATGTTGTTCTCCAGGACGGGCTCATCCAGCGG 3459770
Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054
| ||| | ||||| | | ||| || | |||||| ||||| || | |||||| ||
Sbjct 3459769 GTGGAACACGCGTCGGGCAAACGGAGACAGTCTCGTGAAAATGTAACGAGCGCTGGCAGC 3459710
Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114
||| ||||| | || || | ||||| | || ||||||||| ||||| ||
Sbjct 3459709 ATCGGCACCACCGGAAAGACGAGAACCAAAGTTACCGCTAGGCTCGAGGCAGTTGACATT 3459650
Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174
||||| || || || ||||| || | | |||||| || ||||| || |||||
Sbjct 3459649 GTTGGAACCAACAAAGTTCTGGGCAAGACCCACAATGGTCTGGTGCAGCGAAGCATCACC 3459590
Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234
|||||| || |||| | ||| | | | | || ||||||| ||||||| |||| |
Sbjct 3459589 GTGGTGGTAAGCCGCCAGCTTGGACACGGAGCCAGCCAACTCAAACACCTTCTGGTCCTT 3459530
Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
| ||||||||| ||||||| ||| || ||||||||||| || || | ||||||
Sbjct 3459529 GACAATGTTCTTCTTCAGACAGGTGTAGATAACCTTGCGCTGACCCGGCTTGAGACCGTC 3459470
Query 152295 CACCACGTGAGGAATCGAACGCTTGATGTC 152324
| ||| || || |||||| || ||||
Sbjct 3459469 AATAACGGAGGGGATAGAACGCATGTTGTC 3459440
Score = 127 bits (140), Expect = 2e-24
Identities = 311/459 (68%), Gaps = 17/459 (4%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| || || ||||||||||| || ||| ||||||||||||||
Sbjct 1638859 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATA 1638800
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580
|||| || || || | | | ||| | | | | | | || | | | ||| || |
Sbjct 1638799 AAGTCAAAGGGATTGGTGGAGCGGTAGACCTTGTCGT-TGCCGAGAGCGA-CCAGCAGAC 1638742
Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640
| || || || || | |||||||||| |||| || | |||||| | || |
Sbjct 1638741 GGTCGGCAACGAACTCAATGTACTGCTTCATGAGGGTGGCGTTCATGCCCAGAAGAGCAC 1638682
Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTT 74698
| ||||| |||||||| | |||||| ||| | || | || || | || ||| |
Sbjct 1638681 AGGGCAGGGCCTCGGTCAAAAACTCCTGCTCAATCTTGACGGC--ATCGACGATAATGTC 1638624
Query 74699 GTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754
|| ||| ||| ||| |||| || | ||||||| ||| | ||| | || |||||
Sbjct 1638623 CTGGATGATCTGCTTGCTCGGGCGGTTGT---TCAGGTGGGAGAACAGCAGGCA-GGCAA 1638568
Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814
| || ||| ||| || || | | |||| ||||| || || | || |||||||
Sbjct 1638567 AGTCGGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCAGGCA 1638508
Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874
| || ||||||||||| | ||| ||||||| |||||| || |||||||| ||||| |
Sbjct 1638507 TCAGGCCACGCTTCTTGAGCCAGAAGATGGACGAGAAGGCGCCGCTGAAGAAAATGCCCT 1638448
Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913
|||| ||||| || || ||||| ||||| || ||||
Sbjct 1638447 CGACGGCAGCAAATGCCACGAGGCGCTGCGC-AAAGGTG 1638410
Score = 93.3 bits (102), Expect = 5e-14
Identities = 204/303 (67%), Gaps = 7/303 (2%)
Strand=Plus/Minus
Query 74969 AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAAT 75028
|||||| || || | ||||||| | ||| | ||| ||||||| | |||||||
Sbjct 1638285 AGTATCAATGGCGTTGAAGAGGTGGGTGCGCTCCTTGGGCTCCTTGATGTAGGTGTCAAT 1638226
Query 75029 CATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGA 75088
| || ||||| ||||| || ||||| ||| | | |||| | |||| || |
Sbjct 1638225 GAGCAGAGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCA 1638166
Query 75089 CCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACG 75146
|| ||||| | | ||| || || | |||| || | ||| ||||| |||||
Sbjct 1638165 GCGGGCCTCGGGCACCTGGACCTCGGCGCTGAAGCGCTC--GACGAGGTTCTCGTTGACG 1638108
Query 75147 ATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA 75206
||||| |||||||||||||| || || || | ||| ||| |||||| |||||
Sbjct 1638107 ATGCCATCCGAGGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAAGCGCTCGTCGTCG 1638048
Query 75207 GTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAG 75263
| || |||| ||| || | ||||||| | || |||||||||||| ||||||||
Sbjct 1638047 TTCAGGCGGTTGTGCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCCGTCCAG 1637988
Query 75264 AAA 75266
|||
Sbjct 1637987 AAA 1637985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215822154800
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