Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 338 7e-88 seq1 145 8e-30 >seq2 Length=4288194 Score = 338 bits (374), Expect = 7e-88 Identities = 540/764 (71%), Gaps = 12/764 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACA-CGCGT-GTCCGTGAGACGT 53249 ||||||| || ||| | |||||| |||||||| | | ||||| ||| ||||| | Sbjct 3315941 TCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTTGTC---GAGACAT 3315997 Query 53250 ACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || ||| ||| | | |||| ||| || |||||| |||| || || |||||||| || | Sbjct 3315998 ACAACTACATGTCCAACAAGTTCTTCACACACGCCTCGCCGACGCTCTTCAACGCCGGCA 3316057 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 || || ||||| |||| ||||||||| |||| |||||||| ||| || || | Sbjct 3316058 CGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGACAGCATTGAGG 3316117 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 |||||||||| ||||||||| ||||||| ||||||||| | | ||||| |||||| Sbjct 3316118 GCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGTC 3316177 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | | || || | || | || || | |||| | || || || |||||| | Sbjct 3316178 TGAA-TG-TCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAACGGCACATC 3316235 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || ||| | |||||||| || ||||| |||||||||||||| ||||| ||||||| Sbjct 3316236 CAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGG 3316295 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| |||||| || | ||| ||||||| | ||||||||||||||||| | | Sbjct 3316296 TGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGATGTCTT 3316355 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| || || ||||| ||| |||||| | || ||| | || |||||| || || Sbjct 3316356 TGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTTTT 3316415 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||||| ||||| || || || |||||| | ||||||| ||| |||||| Sbjct 3316416 CCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAGTGGAC 3316475 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 ||||||||||| || |||||| ||||||| || | |||||| ||||||||| | | Sbjct 3316476 GCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAGGAGTTTGAGGC 3316535 Query 53788 GATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 | |||| || ||||| || | ||||||| |||||||||||||| | || Sbjct 3316536 GCTGTACGAGAAGTACG-AGAGCGAGGGCCGTGGTCGTAAGAAGGTCAAGGCCCAGAAGC 3316594 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | || || || || ||| ||||||||| | |||| |||| |||||||| Sbjct 3316595 TGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATGCTCTACAAGG 3316654 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 | |||| |||||||||||||||||| | ||| |||| Sbjct 3316655 ACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATC 3316698 Score = 147 bits (162), Expect = 2e-30 Identities = 551/843 (65%), Gaps = 42/843 (5%) Strand=Plus/Plus Query 55108 GCTTCACGAAGTGACGCGTGTTG--TGACTCGGAACCTGAACCGGGTCATCGACAAGAAT 55165 ||| ||||| || |||| |||| || | || ||||| ||||| |||| ||| ||| Sbjct 3316827 GCTGCACGACGTCACGCA-GTTGGTTGTC-CGCAACCTCAACCGCATCATTGACGTGAAC 3316884 Query 55166 TACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATC 55222 |||||||| | | || ||| || || |||| | || ||||||||||| | | Sbjct 3316885 TACTACCCCGTGCCCGA---GGCACGAAACAGCAACATGCGCCACCGGCCCATTGGTCTG 3316941 Query 55223 GGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCGGAACCT 55282 ||||| ||||| |||| ||| |||| || ||| | ||||||| || ||| Sbjct 3316942 GGTGTGCAGGGTCTGGCAGACGCCTTCCTGGCGCTGCGCATGCCCTTTGAGTCGCCCGAG 3317001 Query 55283 GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTC 55341 || || | ||| || | |||||| || | ||||||| || ||||| |||||| Sbjct 3317002 GCACGCCTGCTGAACAAGCAGATCTTCGAGAC-CATCTACCACGCGGCGCTGACGGAGTC 3317060 Query 55342 GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACA- 55400 ||| ||||| | || |||||| |||||| | || | | || || | || | Sbjct 3317061 GTGCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCTCTCCTG-TGTCGC 3317119 Query 55401 AGGGACTTCTCCAGTTCGATCTATGGGGCAAG------TCTGACCCCATG---TTTGACA 55451 |||| |||| ||| ||| | |||| | | || |||| | | ||| Sbjct 3317120 AGGGCATTCTGCAGCCCGACATGTGGGACGTGACGCCCTCGGACCTGTGGGACTGGGACT 3317179 Query 55452 AGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGC 55511 | || || | || | | || | |||||| ||||| |||||||| |||| Sbjct 3317180 CGCTGCGGCTGAAGATCAAGGAGCACGGTGTGCGCAACAGTCTGCTGGTGGCGCCGATGC 3317239 Query 55512 CAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCA 55571 | || ||||||||| | ||||| |||||||||||||| |||||||| |||||| ||| Sbjct 3317240 CGACGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACGTCCA 3317299 Query 55572 ACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCA 55631 |||||||| ||| || || || || ||||| || ||||| | || ||| Sbjct 3317300 ACATCTACTCGCGGCGTGTGCTGGCCGGCGAGTTCCAGGTGGTCAACCCGTGGCTGCTCA 3317359 Query 55632 AGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAAGA--CGGAT-ATTGTGCGGA 55688 |||||||| | || |||| | || |||| || || |||| | || Sbjct 3317360 AGGACCTGGTCGACATGGGTCTGTGGTCGGACAACATGAAGAACCGCATCATTGCGGAGA 3317419 Query 55689 ACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGCGTC-TCAAGGAGATTTACCGG 55744 || || || ||||||| || | | ||| || | |||||| | ||| | Sbjct 3317420 AC---GGTTCGATCCAGAACATTCCCAACA-TCCCGGCCGACATCAAGGCCCTGTACAAG 3317475 Query 55745 ACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGAGTGCTGATCGTGGTGCG 55801 |||||||||||||| | ||| || ||||| | ||| ||| || |||||||| Sbjct 3317476 ACGGTGTGGGAGATCTCGCAGCGGA---CGATTGTGCAGATGGCTGCAGACCGTGGTGCC 3317532 Query 55802 TACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTG 55861 | ||||||||||| ||||| ||||||||| |||| | || | ||| |||| | Sbjct 3317533 TTTATCGACCAGTCGCAGTCGCTGAACATCCACATGCGTGAGCCGACCATGGGCAAGATC 3317592 Query 55862 AGCTCGATGCACTTTTACGGG-TGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 | |||||| || ||||| |||||| ||| ||||||||||| |||||||| ||||| Sbjct 3317593 ACAAGCATGCAC-TTCACGGGCTGGAAGCTGGGCCTCAAGACGGGCATGTACTACCTGCG 3317651 Query 55921 GAC 55923 || Sbjct 3317652 CAC 3317654 >seq1 Length=5014741 Score = 145 bits (160), Expect = 8e-30 Identities = 306/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| |||||||| || ||||| || |||| | ||| || || |||||| ||||| Sbjct 3459888 CCAGTACCGATACCATCGGCACCGTTGATCAAGACCATGGGGACAACAGGAGCGTAGTTG 3459829 Query 117212 TCAGGCTCCACC-TGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGG 117270 | ||||| | ||| | || || || || || || || || | | || ||| Sbjct 3459828 ACCGGCTCAATGATGCTGCCC-TCATCAATGTTGTTCTCCAGGACGGGCTCATCCAGCGG 3459770 Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 | ||| | | || |||| | || | |||||||||||||||| ||| ||||| Sbjct 3459769 GTGGAACACGCGTCGGGCAAACGGAGACAGTCTCGTGAAAATGTAACGAGCGCTGGCAGC 3459710 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||| ||||| | |||||| | ||| || | || || ||||| | | ||| | || Sbjct 3459709 ATCGGCACCACCGGAAAGACGAGAACCAAAGTTACCGCTAGGCTCGAGGCAGTTGACATT 3459650 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||||| || |||||||| || || | ||||| || || || || ||||| Sbjct 3459649 GTTGGAACCAACAAAGTTCTGGGCAAGACCCACAATGGTCTGGTGCAGCGAAGCATCACC 3459590 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--T 117508 ||||| || |||| | ||| | |||| |||| |||| || | ||||||| ||| | Sbjct 3459589 GTGGTGGTAAGCCGCCAGCTTGGACACGGAGCCAGCCAACTCAAACACCTTCTGGTCCTT 3459530 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568 ||| | ||||||||| || |||| || || ||||||||||||| ||||| ||||| Sbjct 3459529 GACA--ATGTTCTTCTTCAGACAGGTGTAGATAACCTTGCGCTGACCCGGCTTGAGACCG 3459472 Query 117569 TCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 || ||| ||||| |||||| || |||| Sbjct 3459471 TCAATAACGGAGGGGATAGAACGCATGTTGTC 3459440 Score = 141 bits (156), Expect = 1e-28 Identities = 303/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || |||||||||| || | ||| || |||| ||| ||||| Sbjct 3459888 CCAGTACCGATACCATCGGCACCGTTGATCAAGACCATGGGGACAACAGGAGCGTAGTTG 3459829 Query 151936 TCCGGCTCCACC-TGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGG 151994 ||||||| | || || || ||||| || || | || |||| | || ||| Sbjct 3459828 ACCGGCTCAATGATGCTGCCC-TCATCAATGTTGTTCTCCAGGACGGGCTCATCCAGCGG 3459770 Query 151995 ATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGC 152054 | ||| | ||||| | | ||| || | |||||| ||||| || | |||||| || Sbjct 3459769 GTGGAACACGCGTCGGGCAAACGGAGACAGTCTCGTGAAAATGTAACGAGCGCTGGCAGC 3459710 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||| ||||| | || || | ||||| | || ||||||||| ||||| || Sbjct 3459709 ATCGGCACCACCGGAAAGACGAGAACCAAAGTTACCGCTAGGCTCGAGGCAGTTGACATT 3459650 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||||| || || || ||||| || | | |||||| || ||||| || ||||| Sbjct 3459649 GTTGGAACCAACAAAGTTCTGGGCAAGACCCACAATGGTCTGGTGCAGCGAAGCATCACC 3459590 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 |||||| || |||| | ||| | | | | || ||||||| ||||||| |||| | Sbjct 3459589 GTGGTGGTAAGCCGCCAGCTTGGACACGGAGCCAGCCAACTCAAACACCTTCTGGTCCTT 3459530 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | ||||||||| ||||||| ||| || ||||||||||| || || | |||||| Sbjct 3459529 GACAATGTTCTTCTTCAGACAGGTGTAGATAACCTTGCGCTGACCCGGCTTGAGACCGTC 3459470 Query 152295 CACCACGTGAGGAATCGAACGCTTGATGTC 152324 | ||| || || |||||| || |||| Sbjct 3459469 AATAACGGAGGGGATAGAACGCATGTTGTC 3459440 Score = 127 bits (140), Expect = 2e-24 Identities = 311/459 (68%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || ||| |||||||||||||| Sbjct 1638859 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATA 1638800 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGC 74580 |||| || || || | | | ||| | | | | | | || | | | ||| || | Sbjct 1638799 AAGTCAAAGGGATTGGTGGAGCGGTAGACCTTGTCGT-TGCCGAGAGCGA-CCAGCAGAC 1638742 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 | || || || || | |||||||||| |||| || | |||||| | || | Sbjct 1638741 GGTCGGCAACGAACTCAATGTACTGCTTCATGAGGGTGGCGTTCATGCCCAGAAGAGCAC 1638682 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTT 74698 | ||||| |||||||| | |||||| ||| | || | || || | || ||| | Sbjct 1638681 AGGGCAGGGCCTCGGTCAAAAACTCCTGCTCAATCTTGACGGC--ATCGACGATAATGTC 1638624 Query 74699 GTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAA 74754 || ||| ||| ||| |||| || | ||||||| ||| | ||| | || ||||| Sbjct 1638623 CTGGATGATCTGCTTGCTCGGGCGGTTGT---TCAGGTGGGAGAACAGCAGGCA-GGCAA 1638568 Query 74755 ACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 | || ||| ||| || || | | |||| ||||| || || | || ||||||| Sbjct 1638567 AGTCGGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCATTGGAGAAAGTCAGACCAGGCA 1638508 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||| | ||| ||||||| |||||| || |||||||| ||||| | Sbjct 1638507 TCAGGCCACGCTTCTTGAGCCAGAAGATGGACGAGAAGGCGCCGCTGAAGAAAATGCCCT 1638448 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG 74913 |||| ||||| || || ||||| ||||| || |||| Sbjct 1638447 CGACGGCAGCAAATGCCACGAGGCGCTGCGC-AAAGGTG 1638410 Score = 93.3 bits (102), Expect = 5e-14 Identities = 204/303 (67%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 74969 AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAAT 75028 |||||| || || | ||||||| | ||| | ||| ||||||| | ||||||| Sbjct 1638285 AGTATCAATGGCGTTGAAGAGGTGGGTGCGCTCCTTGGGCTCCTTGATGTAGGTGTCAAT 1638226 Query 75029 CATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGA 75088 | || ||||| ||||| || ||||| ||| | | |||| | |||| || | Sbjct 1638225 GAGCAGAGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCA 1638166 Query 75089 CCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACG 75146 || ||||| | | ||| || || | |||| || | ||| ||||| ||||| Sbjct 1638165 GCGGGCCTCGGGCACCTGGACCTCGGCGCTGAAGCGCTC--GACGAGGTTCTCGTTGACG 1638108 Query 75147 ATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA 75206 ||||| |||||||||||||| || || || | ||| ||| |||||| ||||| Sbjct 1638107 ATGCCATCCGAGGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGAAGCGCTCGTCGTCG 1638048 Query 75207 GTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAG 75263 | || |||| ||| || | ||||||| | || |||||||||||| |||||||| Sbjct 1638047 TTCAGGCGGTTGTGCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCCGTCCAG 1637988 Query 75264 AAA 75266 ||| Sbjct 1637987 AAA 1637985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215822154800