Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 3e-19
seq10 86.0 4e-12
>seq2
Length=4288194
Score = 109 bits (120), Expect = 3e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | |||||||| ||||| || || || |||||| || ||||| || || ||
Sbjct 329359 GCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 329300
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || ||||||| | || || || ||||| || | ||||| ||||| |||||
Sbjct 329299 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329240
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| ||||||||||| |||| || | || ||| | ||| ||||| | ||||
Sbjct 329239 AATGCCCTCCTTGTCCTGGATC-TTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCA 329181
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || ||||| || || || | || || || |||||||||||
Sbjct 329180 CTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 105 bits (116), Expect = 4e-18
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||| || || || |||||| |||||||| || || || || || ||
Sbjct 329121 AGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGG 329062
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| | || || || ||||| || | ||||| ||||| ||||| | ||||||
Sbjct 329061 CCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 329002
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | ||| ||||| ||| || |||| ||
Sbjct 329001 TTGTCTTGGATC-TTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGT 328943
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || || || || || ||||| || ||||||
Sbjct 328942 AATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||| ||||| || |||||| || ||||| || || || || || || | || ||
Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || || || ||||| || | ||||| ||||| ||||| | |||||||||||| |
Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||| || | || ||| | ||| ||||| ||| || |||| || ||||| ||
Sbjct 328764 ATC-TTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTT 328706
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || ||||| || ||||||
Sbjct 328705 GCCCGTCAAGGTCTTGACAAAGATTTGCATG 328675
>seq10
Length=919426
Score = 86.0 bits (94), Expect = 4e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | || |||| ||||| ||||| ||||||||||| || ||||| || || |
Sbjct 645316 CGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 645257
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || || || |||| || || || || || || || || | ||||| ||||| || |
Sbjct 645256 ACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 645197
Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622
| | ||||||||||| ||||||
Sbjct 645196 GAATGCCCTCCTTGTCCTGGATCTT 645172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729500270058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |