Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq10 109 5e-19
seq2 104 2e-17
>seq10
Length=919426
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || ||||||||||| || || || || || |||| || || || |||| ||
Sbjct 645297 CACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTC 645238
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| || || || || ||||||||||| | ||| | || ||| ||||||
Sbjct 645237 CAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 645178
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| | | | || ||| ||||||||| || | |||||| | ||
Sbjct 645177 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 645118
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || || || || ||||| |||||
Sbjct 645117 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq2
Length=4288194
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || || |||| || || || |||| ||
Sbjct 329113 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCCGTCTTC 329054
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||||||||| || || ||||||||||| | || | || ||| |||||
Sbjct 329053 CAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTG 328994
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || |||||| || |||| ||| || | |
Sbjct 328993 GATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCT 328935
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||||| || || ||||||||||||||
Sbjct 328934 TGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || || ||| || || || || || || |||| || || || |||| ||
Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| || || ||||||||||||||||||| ||| | || ||| |||||| |
Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || |||| ||| | | | ||||| ||||| || || | |||||| | ||
Sbjct 328308 ATCTTGGACTTGA-CGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTT 328250
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || ||||| || || || || |||||
Sbjct 328249 GCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || ||||| ||| || || || || || || | || || || | || ||
Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || || ||||||||||| | || | || ||| ||||| |
Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || |||| ||| | | | ||| || |||||| || |||| ||| || | ||
Sbjct 328764 ATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTT 328706
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||||| || || ||||||||||||||
Sbjct 328705 GCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || || ||| || || || || || |||| || || || |||| ||
Sbjct 329341 CACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTC 329282
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| ||||||||||| || || ||||||||||| | || | || ||| ||||||
Sbjct 329281 CAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTG 329222
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| |||| ||| | | | || || || ||||| |||| ||| || | |
Sbjct 329221 GATCTTCGACTTGA-CGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCT 329163
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| |||||||| || || || || || |||||
Sbjct 329162 TGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545463887738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |