Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 4e-19
seq3 86.0 4e-12
>seq2
Length=4288194
Score = 109 bits (120), Expect = 4e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| ||||| || ||||| || || ||||| || ||| ||
Sbjct 329132 ATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTGGAAGTGGAATCCTCG 329191
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || ||||| || || | |||||||| ||
Sbjct 329192 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 329251
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || ||||| ||||| || ||||||||| || || | ||| ||||||
Sbjct 329252 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329311
Query 23791 ATACAAAAAGAGTCCACA 23808
|| || || ||||| |||
Sbjct 329312 ATCCAGAAGGAGTCGACA 329329
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || ||||||||||| || || || |
Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || ||| ||||| || || | |||||||| ||
Sbjct 328508 GACACGATCGACAATGTCAAGA-GCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCA 328566
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| || ||||| || | ||||| | || |||||
Sbjct 328567 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 328626
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 328627 CATCCAGAAGGAGTCTAC 328644
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || ||||| || || || ||||| || || || || || ||
Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || || || ||||| || || | || || || ||
Sbjct 328280 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 328339
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || ||||| || ||||| |||| ||||| | ||| ||||||
Sbjct 328340 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 328399
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || || |||||
Sbjct 328400 ATCCAGAAGGAATCCAC 328416
>seq3
Length=3655701
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671
||||| |||||| || ||||||||||| || || ||||| ||||| || || ||| |||
Sbjct 2673787 TGCAG--TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGG 2673730
Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731
|||| | || | | || || || ||||| || || | ||||| || || |
Sbjct 2673729 ACACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 2673670
Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791
|||| | || ||||||||||| || || || || | || || | ||| |||||||
Sbjct 2673669 AGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACA 2673610
Query 23792 TACAAAAAGAGTCCAC 23807
| || || ||||| ||
Sbjct 2673609 TCCAGAAGGAGTCGAC 2673594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009492893208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |