Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 seq3 86.0 4e-12 >seq2 Length=4288194 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| || ||||| || || ||||| || ||| || Sbjct 329132 ATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTGGAAGTGGAATCCTCG 329191 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | |||||||| || Sbjct 329192 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 329251 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || ||||||||| || || | ||| |||||| Sbjct 329252 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329311 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 329312 ATCCAGAAGGAGTCGACA 329329 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||||||||| || || || | Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || ||| ||||| || || | |||||||| || Sbjct 328508 GACACGATCGACAATGTCAAGA-GCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCA 328566 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || ||||| || | ||||| | || ||||| Sbjct 328567 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 328626 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 328627 CATCCAGAAGGAGTCTAC 328644 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| || || || ||||| || || || || || || Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || || | || || || || Sbjct 328280 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 328339 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || ||||| |||| ||||| | ||| |||||| Sbjct 328340 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 328399 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 328400 ATCCAGAAGGAATCCAC 328416 >seq3 Length=3655701 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||| |||||| || ||||||||||| || || ||||| ||||| || || ||| ||| Sbjct 2673787 TGCAG--TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGG 2673730 Query 23672 ACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| | || | | || || || ||||| || || | ||||| || || | Sbjct 2673729 ACACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGC 2673670 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 |||| | || ||||||||||| || || || || | || || | ||| ||||||| Sbjct 2673669 AGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACA 2673610 Query 23792 TACAAAAAGAGTCCAC 23807 | || || ||||| || Sbjct 2673609 TCCAGAAGGAGTCGAC 2673594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009492893208