Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 6e-29
seq10 134 3e-26
seq3 127 5e-24
>seq2
Length=4288194
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||| || ||||| || || || || || |||| ||||| |||| || ||
Sbjct 329353 ACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 329294
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| | |||||| || || || || || || || ||||| |||||||| ||
Sbjct 329293 CCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCC 329234
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || || |||||||| |||| |||||| || |
Sbjct 329233 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAG 329174
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| |||||||||||||||| || || | ||| | |||||
Sbjct 329173 CGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| |||||||| || |||| ||||| |||| | || | || ||
Sbjct 328431 AGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 328372
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||||||||| || || |||||||| ||||| || ||||||||
Sbjct 328371 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 328312
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || ||||| || || | || || || | |||||| |||
Sbjct 328311 TGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTC 328252
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 328251 TTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| || || || || |||| ||||| || | | || | |||||
Sbjct 328887 AGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 328828
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| || || || ||||| ||||| || || |||||||||
Sbjct 328827 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCT 328768
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || || ||||| || | || || || ||||| ||||||
Sbjct 328767 TGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTC 328708
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||||||||| || || | || | ||||||
Sbjct 328707 TTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | ||| || || || || || || | ||||| |||| || ||
Sbjct 329125 ACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGT 329066
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| | |||||| || || || || || || || ||||| ||||| || ||
Sbjct 329065 CCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCC 329006
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| ||| || || || ||||| || | || || || ||
Sbjct 329005 CTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAA 328946
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||||||||||||||| || || | || | ||||||
Sbjct 328945 CGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
>seq10
Length=919426
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || |||||||| ||| || || |||| ||||| |||| || ||
Sbjct 645309 ACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGT 645250
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| || || || ||||| || ||||| ||
Sbjct 645249 CCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCC 645190
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 645189 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 645130
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||| | || || | ||| | |||||
Sbjct 645129 GGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq3
Length=3655701
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||| || || || || |||| ||||| |||| || || | |||||
Sbjct 2673579 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCC 2673638
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || || || ||||| ||||| || || ||||||||
Sbjct 2673639 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 2673698
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| |||| || || || | ||||| |||
Sbjct 2673699 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 2673758
Query 225682 TTGCCCGT 225689
||||||||
Sbjct 2673759 TTGCCCGT 2673766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530802738044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |