Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3 183 6e-41
seq2 179 8e-40
seq10 161 2e-34
seq1 89.7 1e-12
>seq3
Length=3655701
Score = 183 bits (202), Expect = 6e-41
Identities = 174/220 (79%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | || || || |||||||||||||| |
Sbjct 2673563 ACCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2673622
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||| ||||||||||| || || || ||||||||||||| || || |||||| |||
Sbjct 2673623 CAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGG 2673682
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| ||||||||||| |||||| ||||| || ||| | ||||| |||||||| | ||||
Sbjct 2673683 GATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGA 2673741
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
| ||||| ||||| ||||| ||||| | ||||| |||||
Sbjct 2673742 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2673781
>seq2
Length=4288194
Score = 179 bits (198), Expect = 8e-40
Identities = 178/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 328674 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328615
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || |||||||||| || || ||||| ||||
Sbjct 328614 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGA 328555
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| ||| || || | ||||| ||||| || | |||||
Sbjct 328554 ATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGACGACTCGAC 328496
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 328495 CTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 174 bits (192), Expect = 3e-38
Identities = 177/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 328902 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328843
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || |||||||||| || || ||||| |||
Sbjct 328842 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 328783
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||||||| ||||| || ||| | || || |||||||| | || ||
Sbjct 328782 ATGCCCTCCTTGTCTTGGATC-TTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAAC 328724
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || |||||||| |||||||| ||||| || || || |||||
Sbjct 328723 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Score = 168 bits (186), Expect = 1e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| ||||| || | ||| ||| || |||||||||||||| |
Sbjct 328447 ACCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 328388
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || ||||| | ||| || ||||| ||
Sbjct 328387 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGG 328328
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | || || || ||||||| |||||
Sbjct 328327 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGAC 328268
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 328267 CTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || ||||| || | || || || |||||||||||||| |
Sbjct 329358 CCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 329299
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||| || || | || || || ||||| |||| || || ||||| ||||
Sbjct 329298 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGA 329239
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| | || ||| | || || |||||||| | ||| |||
Sbjct 329238 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACT 329179
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || |||||||| ||||||| ||||| ||||| ||||||||
Sbjct 329178 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 145 bits (160), Expect = 2e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || |||| || | ||| || || || ||||||||||| |
Sbjct 329131 ACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 329072
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||| ||||| || || | || || || ||||| |||| || || ||||| |||
Sbjct 329071 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329012
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| |||||||||||||||||| ||||| || ||| | || || |||||||| | || |
Sbjct 329011 GATGCCCTCCTTGTCTTGGATC-TTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAA 328953
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || | || |||||||| |||||||| ||||| || || || |||||
Sbjct 328952 CCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
>seq10
Length=919426
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || ||||| || | |||||| || || |||||||||||||| |
Sbjct 645314 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 645255
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || || || ||||||| || || ||||| |||
Sbjct 645254 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 645195
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| | || || | ||||| ||||| || | || ||
Sbjct 645194 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 645135
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 645134 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq1
Length=5014741
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 230222 TCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTAT 230281
|||| | |||||||| || |||||| ||| || || || ||||| || || ||| |
Sbjct 1638686 TCTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCT 1638745
Query 230282 TTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341
| || || || || |||| || || || ||||| || ||||| | ||||||||
Sbjct 1638746 GCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGA 1638805
Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAG 230401
| ||| || || || || || ||||||||||| ||||| ||| |||| || || |
Sbjct 1638806 GAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAA 1638865
Query 230402 GCCCGGTGT 230410
| |||||||
Sbjct 1638866 GGCCGGTGT 1638874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738851305004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |