Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3 183 6e-41 seq2 179 8e-40 seq10 161 2e-34 seq1 89.7 1e-12 >seq3 Length=3655701 Score = 183 bits (202), Expect = 6e-41 Identities = 174/220 (79%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | || || || |||||||||||||| | Sbjct 2673563 ACCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2673622 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||||||||| || || || ||||||||||||| || || |||||| ||| Sbjct 2673623 CAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGG 2673682 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||| ||||| || ||| | ||||| |||||||| | |||| Sbjct 2673683 GATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGA 2673741 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 | ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 2673742 CCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2673781 >seq2 Length=4288194 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 328674 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328615 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| |||| Sbjct 328614 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGA 328555 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| ||| || || | ||||| ||||| || | ||||| Sbjct 328554 ATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGACGACTCGAC 328496 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 328495 CTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 328902 CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAG 328843 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| ||| Sbjct 328842 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 328783 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||| ||||| || ||| | || || |||||||| | || || Sbjct 328782 ATGCCCTCCTTGTCTTGGATC-TTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAAC 328724 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| |||||||| ||||| || || || ||||| Sbjct 328723 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| ||||| || | ||| ||| || |||||||||||||| | Sbjct 328447 ACCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 328388 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || || ||||| | ||| || ||||| || Sbjct 328387 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGG 328328 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || || ||||||| ||||| Sbjct 328327 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGAC 328268 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 328267 CTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || ||||| || | || || || |||||||||||||| | Sbjct 329358 CCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 329299 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || | || || || ||||| |||| || || ||||| |||| Sbjct 329298 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGA 329239 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | || || |||||||| | ||| ||| Sbjct 329238 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACT 329179 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || |||||||| ||||||| ||||| ||||| |||||||| Sbjct 329178 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | ||| || || || ||||||||||| | Sbjct 329131 ACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 329072 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| || || | || || || ||||| |||| || || ||||| ||| Sbjct 329071 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329012 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || |||||||||||||||||| ||||| || ||| | || || |||||||| | || | Sbjct 329011 GATGCCCTCCTTGTCTTGGATC-TTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAA 328953 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | || |||||||| |||||||| ||||| || || || ||||| Sbjct 328952 CCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904 >seq10 Length=919426 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | |||||| || || |||||||||||||| | Sbjct 645314 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 645255 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || || ||||||| || || ||||| ||| Sbjct 645254 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 645195 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || || | ||||| ||||| || | || || Sbjct 645194 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 645135 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 645134 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088 >seq1 Length=5014741 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 230222 TCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTAT 230281 |||| | |||||||| || |||||| ||| || || || ||||| || || ||| | Sbjct 1638686 TCTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCT 1638745 Query 230282 TTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341 | || || || || |||| || || || ||||| || ||||| | |||||||| Sbjct 1638746 GCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGA 1638805 Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAG 230401 | ||| || || || || || ||||||||||| ||||| ||| |||| || || | Sbjct 1638806 GAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAA 1638865 Query 230402 GCCCGGTGT 230410 | ||||||| Sbjct 1638866 GGCCGGTGT 1638874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738851305004