Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq10 163 2e-35
seq2 150 1e-31
seq3 123 2e-23
>seq10
Length=919426
Score = 163 bits (180), Expect = 2e-35
Identities = 167/216 (77%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||||||| |||||||||||||| ||||||||||| |||| || || ||||
Sbjct 645300 CAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTC 645241
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
||||||||||| || || ||||||| |||||||| |||| || | || ||||| ||
Sbjct 645240 CTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 645181
Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302
| ||||| ||| || ||| | |||||||||| || |||||||| | || ||
Sbjct 645180 CTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 645123
Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||| |||||||||||||| |||||||| ||||||
Sbjct 645122 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 645087
>seq2
Length=4288194
Score = 150 bits (166), Expect = 1e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||||||| || || |||||| ||||||||||| |||| || || ||||
Sbjct 329344 CAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTC 329285
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || ||||| |||| |||||||| |||| || | || ||||| ||
Sbjct 329284 TTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTC 329225
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| |||||| ||| | | | |||||||| | ||||||||| |||| |||||||||
Sbjct 329224 CTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGT 329165
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||| |||||||| ||||| || |||||
Sbjct 329164 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 140 bits (154), Expect = 2e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| ||||| |||||| ||||||||||| || | ||| ||| | || |||
Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| |||||||| |||| || | || ||||| ||
Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||| | || || ||||||| ||||||||||||
Sbjct 328764 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328705
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||| | |||||| || ||||||||||||
Sbjct 328704 CCCGTCAAGGTCTTGACAAAGATTTGCATG 328675
Score = 131 bits (144), Expect = 1e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | || ||||| ||| ||||| |||||| || |||||||| ||
Sbjct 329134 CATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 329075
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || || |||| |||| |||||| || ||||| |||| |||||||| ||||
Sbjct 329074 GGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGG 329015
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
|| | || ||||| || ||||| ||| | | | || ||||| | || ||
Sbjct 329014 CGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTC 328955
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
||||||| |||||||||||| ||||| | |||||| || ||||||||||||
Sbjct 328954 AACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 127 bits (140), Expect = 1e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || ||| ||||| ||||||||||| |||| ||| ||| |||| |||
Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || ||||| | ||||||||| || | || | || ||||| |||
Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | ||||| || | || || ||||| | ||| || |||||
Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|| ||||| ||||| ||||| || |||||||||
Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCATGATG 328216
Score = 127 bits (140), Expect = 1e-24
Identities = 156/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| ||||| |||||| ||||||||||| || | ||| ||| | || |||
Sbjct 328656 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328597
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| |||||||| |||| || | || ||||| |||
Sbjct 328596 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 328537
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | || ||||||| || || ||||| | || || ||||
Sbjct 328536 ATCTTGCTCTTGACATTGT--CGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCT 328479
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || ||||| |||||||| |||||
Sbjct 328478 TGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
>seq3
Length=3655701
Score = 123 bits (136), Expect = 2e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| || || |||||| ||||||||||| |||| || || | || ||
Sbjct 2673581 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2673640
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||||||||||| |||||||| || | || | || ||||| |||
Sbjct 2673641 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2673700
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||| | ||| || ||||| | || || |||||
Sbjct 2673701 GATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2673760
Query 44308 TCCCGTGAGGGTCTTCACGAA 44328
||||||||||||||||||||
Sbjct 2673761 GCCCGTGAGGGTCTTCACGAA 2673781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990285928042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |