Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq10 183 3e-41
seq2 163 3e-35
seq3 125 7e-24
>seq10
Length=919426
Score = 183 bits (202), Expect = 3e-41
Identities = 181/232 (78%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || || || || | |||||| || ||||||||||||||||| ||||| |||||||
Sbjct 645316 CGCCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGG 645257
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| ||||| || |||| || ||||||||||| ||||| ||||||||||| ||||| | ||
Sbjct 645256 ACAGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGG 645197
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811
||| || |||||||||| ||| || ||| || | || | |||||| ||||||
Sbjct 645196 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACTC 645139
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||| | || || || || ||||| || ||||| ||||| |||||||||
Sbjct 645138 CACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 645087
>seq2
Length=4288194
Score = 163 bits (180), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | |||||| ||||| || ||||||||| ||||| ||||||||
Sbjct 329359 GCCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 329300
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| || | ||||||||| || || ||||||||||| ||||| | ||
Sbjct 329299 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329240
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| || ||| ||| | | | ||||| || ||||
Sbjct 329239 AATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCAATGGTGTCCGAGGATTCCA 329181
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| |||| ||| ||||| || |||||||| ||||| ||||||||||||||
Sbjct 329180 CTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 154 bits (170), Expect = 1e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| |||||||| ||||| |||||||||
Sbjct 328446 CCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 328387
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || ||||||||||| ||||| || || ||||| ||||| | ||||
Sbjct 328386 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGA 328327
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | || || ||||| ||
Sbjct 328326 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTATCCGAAGACTCGAC 328268
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | ||| || || || || || |||||||| |||||||||||||||
Sbjct 328267 CTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCATG 328219
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| |||||||| ||||||||||||||| ||||||||
Sbjct 329130 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAC 329071
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || | ||||||||| || || ||||||||||| ||||| | ||
Sbjct 329070 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGG 329011
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| || ||| ||| | | | ||||| |||||| ||
Sbjct 329010 ATGCCCTCCTTGTCTTGGATCTTGCTCTT-GACGTTGTCAATCGTGTCCGACGACTCAAC 328952
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| ||| ||||| || ||||||| ||||| || || || ||||||
Sbjct 328951 CTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 143 bits (158), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||||| || ||||| ||||||||| ||||| ||||| ||
Sbjct 328675 GCCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 328616
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || ||||||||||| || || ||||||||||| ||||| | ||
Sbjct 328615 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGG 328556
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
|| || |||||||||| || || ||| || | || | |||||| ||||||
Sbjct 328555 AATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCG--ATCGTGTCGGACGACTCG 328498
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || || |||||||| ||||| ||||||||
Sbjct 328497 ACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 141 bits (156), Expect = 9e-29
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||||| || ||||| ||||||||| ||||| ||||| ||
Sbjct 328903 GCCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 328844
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| | || || ||||||||||| || || ||||||||||| ||||| | ||
Sbjct 328843 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGG 328784
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||||||||| ||| || ||| ||| | | | ||||| |||||| |
Sbjct 328783 GATGCCCTCCTTGTCTTGGATCTTGCTCTT-GACGTTGTCAATCGTGTCCGACGACTCAA 328725
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||||| ||| ||||| || ||||||| ||||| || || || ||||||
Sbjct 328724 CCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328675
>seq3
Length=3655701
Score = 125 bits (138), Expect = 7e-24
Identities = 166/227 (73%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||| || || || ||||||||| ||||| ||||||||
Sbjct 2673564 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2673623
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||||||||| || ||||||||||| ||||| | ||
Sbjct 2673624 AGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGG 2673683
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | ||||| ||||| ||
Sbjct 2673684 ATGCCCTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCGATGGTGTCCGAGGACTCGAC 2673742
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861
||| | || || || || ||||| || ||||| |||||| |||||
Sbjct 2673743 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303849751200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |