Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq41 159 4e-34 >seq41 Length=3900177 Score = 159 bits (176), Expect = 4e-34 Identities = 457/687 (67%), Gaps = 28/687 (4%) Strand=Plus/Plus Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 ||||| | || ||||||| || |||||| |||| | || ||| || ||||| || || Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || || ||||| || || | || ||||| | || | ||||| || ||| ||| Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || ||||||||| | | | ||| | ||||||||| |||||||| ||| || | Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318 Query 54167 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224 | | || ||||| ||||| || |||||||| | ||| | || ||||| || | || | Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378 Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 | ||| || || || || ||||||| || || || |||| || || || | | Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438 Query 54285 CACGAAT---ATT-ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 ||||||| || || ||| | |||| || || || ||| | || ||||| | || Sbjct 918439 CACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCA 918494 Query 54341 CATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 || ||| || | ||| || ||||||||||| || ||||||||| |||||| | || || Sbjct 918495 CA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAA 918553 Query 54400 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 ||| |||| | ||| | || || || || || || | || || || || | Sbjct 918554 GCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCAT 918609 Query 54456 GCGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 ||||||| | || ||| | |||| ||||| ||||||| | | || | || ||| Sbjct 918610 GCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CAT 918666 Query 54515 TG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | || || || || || ||||| | ||||||||| || | || |||||||| Sbjct 918667 CGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTAC 918726 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 | | || || | |||||| |||| || || || ||||| || | ||| | Sbjct 918727 CATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGA 918786 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGT 54659 |||| || ||||| | ||| | |||| Sbjct 918787 AGTCCCGGTCGTAGACAATGGCCGAGT 918813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721280874640