Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq22 125 6e-24 seq11 125 6e-24 seq41 93.3 4e-14 >seq22 Length=1908885 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| ||| | ||||| ||||||| Sbjct 662905 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 662964 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| | Sbjct 662965 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGA 663024 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||||||||||| || | || ||| Sbjct 663025 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 663084 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||| || ||||| Sbjct 663085 CCGGTGAGTGTCTTGACAAAGATTTGCAT 663113 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| ||||| || ||||| || || |||||||| ||| Sbjct 663113 TACCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 663172 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||| | ||| || ||||| |||| || |||||||| || || | Sbjct 663173 AGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCG 663232 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| ||| || || || | || | ||| || | ||||| Sbjct 663233 GGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGA 663292 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | ||| | || |||||||| || || || || || ||||||||| Sbjct 663293 CCTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATG 663342 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||| || || |||||||| ||| || || || ||| Sbjct 1644169 CAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATC 1644110 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| || |||||||| || || || |||||||||||||| Sbjct 1644109 CTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1644050 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| ||||| | ||| ||||| | ||| | || Sbjct 1644049 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGT 1643990 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || || || || |||||||||| Sbjct 1643989 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGG 1643955 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || ||||| || || |||||||| || Sbjct 662657 TACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAG 662716 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||| ||||| || || ||| | || || |||||||| ||||||| Sbjct 662717 ACAGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAG 662776 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || || || | |||| ||||| | ||| | Sbjct 662777 GGATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAA 662836 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||| |||||||| || || || ||||| || ||||| Sbjct 662837 CTTCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || ||||||||||| || || || || ||| Sbjct 662445 CAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCCATC 662504 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || || ||| | || || |||||||| || || || |||||||||||||| Sbjct 662505 TTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTC 662564 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| ||||||| || || || | || | ||| Sbjct 662565 CTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTAATCGT 662624 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || || ||||||||||| Sbjct 662625 CTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 >seq11 Length=5116797 Score = 125 bits (138), Expect = 6e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 2814763 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2814822 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 2814823 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2814882 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| | ||||||||||| ||| | || || Sbjct 2814883 GATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2814942 Query 118709 GCCGGTCAGAGTTTTTACAAAA 118730 ||| || || || || || ||| Sbjct 2814943 GCCCGTGAGGGTCTTCACGAAA 2814964 >seq41 Length=3900177 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133219 ACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCGACGTG 133277 || |||||||||| || ||||| ||||| || || || | ||| || | || || ||| Sbjct 917287 ACGGGTTGACCACCTGGAACTCACCGGCCAGCACACGCCGCGAG-TAAATGTTGGATGTG 917345 Query 133278 AACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTAC 133337 |||| ||||| | ||||||||||| || ||||| | ||||| |||||| ||||| | Sbjct 917346 TACGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGC 917405 Query 133338 GCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAG 133397 ||||||| || | ||| | || |||| || || || || | ||| || ||| Sbjct 917406 GCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAA 917465 Query 133398 TCCCACAG 133405 |||||||| Sbjct 917466 TCCCACAG 917473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830172645756