Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq22 127 2e-24
seq11 102 9e-17
>seq22
Length=1908885
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| || | ||||||||||| || || ||||| || | ||| ||||| |
Sbjct 1644171 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCA 1644112
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||| | || | || |||||||
Sbjct 1644111 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 1644052
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| ||| ||||| || | |||||
Sbjct 1644051 TCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATA 1643992
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| || ||||| || ||||| |||||
Sbjct 1643991 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957
Score = 123 bits (136), Expect = 3e-23
Identities = 159/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| |||| || |||||| || || ||||| |||| ||| ||||| |
Sbjct 662670 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCC 662729
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || ||||| || || ||||||||||||| || | | ||||||
Sbjct 662730 GTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTT 662789
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| || || | ||| | | | ||||| ||| || || || | ||| |
Sbjct 662790 GTCTTGGATCTTCGACTTTA-CGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAA 662848
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || ||||| || || ||||| ||||||||||||||
Sbjct 662849 TCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 662922 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 662981
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110
|| || ||||||||||| | ||| | || |||||||||| ||| | || | ||||
Sbjct 662982 GATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACAT 663040
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||||| ||| || || |||| |||||||| ||||| || || ||||| |
Sbjct 663041 TGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGA 663100
Query 43171 CAAAGATTTGCAT 43183
|||||||||||||
Sbjct 663101 CAAAGATTTGCAT 663113
Score = 113 bits (124), Expect = 5e-20
Identities = 159/218 (73%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| |||| || |||||| ||||| ||||| || | ||| ||||| |
Sbjct 662442 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCC 662501
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || | |||||| || ||||| || || ||||||||||| | ||| | || ||||||
Sbjct 662502 ATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 662561
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | | | ||||| |||||||| || | |||
Sbjct 662562 GTCC-TGAATCTTCGACTTGA-CGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTA 662619
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || ||||| || ||||| || || || |||||
Sbjct 662620 ATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
Score = 104 bits (114), Expect = 3e-17
Identities = 157/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| || | ||| |||||| || || ||||| || | || || || |
Sbjct 663126 ACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACC 663185
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| ||||| || || || ||||||||||| | ||| | || ||||||
Sbjct 663186 GTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 663245
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | | | || ||| || || || || | |||
Sbjct 663246 GTCC-TGAATCTTGGACTTGA-CGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTG 663303
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| ||||| || |||||||| || ||||| |||||
Sbjct 663304 ATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
>seq11
Length=5116797
Score = 102 bits (112), Expect = 9e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| || | ||| |||||| || || ||||| || | ||| ||||| | || ||
Sbjct 2814763 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2814822
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| ||||| || || || ||||||||||| | ||| | || ||||||||||
Sbjct 2814823 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2814882
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
||| || |||| | | | ||||| || || || |||| |||||||| ||
Sbjct 2814883 GATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2814942
Query 43154 GCCCGTTAGCGTCTTTACAAA 43174
|||||| || ||||| || ||
Sbjct 2814943 GCCCGTGAGGGTCTTCACGAA 2814963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817292648040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |