Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq22 127 2e-24 seq11 102 9e-17 >seq22 Length=1908885 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||||||||||| || || ||||| || | ||| ||||| | Sbjct 1644171 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCA 1644112 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | || | || ||||||| Sbjct 1644111 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 1644052 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| | | | |||||| ||| ||||| || | ||||| Sbjct 1644051 TCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATA 1643992 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 1643991 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| || |||||| || || ||||| |||| ||| ||||| | Sbjct 662670 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCC 662729 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||||| || | | |||||| Sbjct 662730 GTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTT 662789 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || || | ||| | | | ||||| ||| || || || | ||| | Sbjct 662790 GTCTTGGATCTTCGACTTTA-CGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAA 662848 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| |||||||||||||| Sbjct 662849 TCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| ||||| || Sbjct 662922 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 662981 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || ||||||||||| | ||| | || |||||||||| ||| | || | |||| Sbjct 662982 GATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACAT 663040 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 663041 TGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGA 663100 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 663101 CAAAGATTTGCAT 663113 Score = 113 bits (124), Expect = 5e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| ||||| ||||| || | ||| ||||| | Sbjct 662442 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGACAGCGTCCGGCC 662501 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 662502 ATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 662561 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | ||||| |||||||| || | ||| Sbjct 662562 GTCC-TGAATCTTCGACTTGA-CGTTGTCGATTGTGTCCGAAGATTCCACTTCCAGCGTA 662619 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||| || || || ||||| Sbjct 662620 ATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657 Score = 104 bits (114), Expect = 3e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| || | ||| |||||| || || ||||| || | || || || | Sbjct 663126 ACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACC 663185 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| ||||| || || || ||||||||||| | ||| | || |||||| Sbjct 663186 GTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 663245 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | || ||| || || || || | ||| Sbjct 663246 GTCC-TGAATCTTGGACTTGA-CGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTG 663303 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| || |||||||| || ||||| ||||| Sbjct 663304 ATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341 >seq11 Length=5116797 Score = 102 bits (112), Expect = 9e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || | ||| ||||| | || || Sbjct 2814763 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2814822 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || || ||||||||||| | ||| | || |||||||||| Sbjct 2814823 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2814882 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | ||||| || || || |||| |||||||| || Sbjct 2814883 GATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2814942 Query 43154 GCCCGTTAGCGTCTTTACAAA 43174 |||||| || ||||| || || Sbjct 2814943 GCCCGTGAGGGTCTTCACGAA 2814963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817292648040