Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq22 149 4e-31
seq11 118 7e-22
>seq22
Length=1908885
Score = 149 bits (164), Expect = 4e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || |||| |||||||||||| | || || || ||||| |||||||||||||||
Sbjct 1644183 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 1644124
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| ||||||||||||||| || || ||||||||||| |||
Sbjct 1644123 AGGGTCCGGCCATCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 1644064
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | |||| ||| || ||
Sbjct 1644063 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGACGACTCCACC 1644004
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| || || || || || |||||||||||
Sbjct 1644003 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1643957
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || |||||||| | |||| || ||||| ||||||||||||||
Sbjct 662887 CCACCACGCAGGCGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 662946
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
|| ||| | || || | ||||||||| || || || || ||||||||||| | ||||
Sbjct 662947 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663006
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | || | | |||| |||| ||| |||||
Sbjct 663007 -ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGAC 663065
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||||||||| || || |||||||| |||||
Sbjct 663066 CTCGAGAGTGATGGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 663113
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||||| ||| | || || ||||| ||||||||||| |||
Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| |||| ||||||||| |||||||| || |||||||||||| ||
Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||||| | | | || | || | ||| || ||
Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACT 662838
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || ||||||||||| || || |||||||| |||||
Sbjct 662839 TCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Score = 138 bits (152), Expect = 7e-28
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | ||||||||||| | || || ||||| ||||||||||||||
Sbjct 663115 CCACCGCGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 663174
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
|| || |||| |||||||||||||| || || || || ||||||||||| | ||||
Sbjct 663175 AGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 663234
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | | | | || | ||||| || |||||
Sbjct 663235 -ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGGAAGACTCGAC 663293
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| ||||||||||| || || || |||||||||||
Sbjct 663294 CTCAAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 663341
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| | |||||||||||| | || || ||||| ||||||||||| |||
Sbjct 662431 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAC 662490
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || |||||||||||||| |||||||| || ||||||||||| ||
Sbjct 662491 AGCGTCCGGCCATCTTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCAGGCGGA 662550
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | || | || | ||||| ||
Sbjct 662551 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATTGTGTCCGAAGATTCCACT 662610
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || || || || || || || || || ||||||||
Sbjct 662611 TCCAGCGTAATCGTCTTACCCGTCAGGGTCTTGACGAAAATCTGCAT 662657
>seq11
Length=5116797
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||||||| | || || ||||| |||||||||||||||
Sbjct 2814746 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2814805
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
||| ||| | || || | ||||||||| || || || || ||||||||||| | ||||
Sbjct 2814806 AGCGTCCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 2814865
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | || | | || | || | || |||||
Sbjct 2814866 -ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCCGAGGACTCGAC 2814924
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | |||||||| ||||| ||||| || ||||| ||
Sbjct 2814925 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 2814963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071830690080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |