Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq41 120 7e-22 seq11 120 7e-22 seq4 104 5e-17 >seq41 Length=3900177 Score = 120 bits (132), Expect = 7e-22 Identities = 424/655 (65%), Gaps = 13/655 (2%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||||| ||||| || |||||| Sbjct 918808 GCCATTGTCTACGACCGGGACTTCAACTACCAATACTTTGGCTTCAAGACCCTGGAGCGG 918749 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || |||||||| | ||||| |||||||| || || ||||||||| | ||||| Sbjct 918748 TCCTACCTCCTCAAGCTCGATGGTAAGATCGTCGAGCGGCCGCAGCACATGATTATGCGC 918689 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 ||||| || || || ||||| | ||| | || ||||||| |||| | ||| Sbjct 918688 GTGGCCGTTGGTATCTGGGGCGATGATGTGGAGCGTGTTGTCGAGACATACAACTACATG 918629 Query 248971 AGTGAACGC-TGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAA 249029 |||| | | || |||||| | |||||||| ||||||||||| || | | Sbjct 918628 TC-GAACAAGTTCTTTACGCATGCCTCGCCGACGCTTTTCAACGCCGGCACGCCCCAGGC 918570 Query 249030 TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGA 249089 ||||||| ||| ||||| || | | |||| | || || | || ||||| || || Sbjct 918569 TCAGCTGTCCTCCTGCTTCCTCGTAGACATGAAGGATGATAGCATTGAGGGCATCTACGA 918510 Query 249090 CACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT 249146 |||||| | ||||| || | ||| || || || || || |||||||| || Sbjct 918509 CACGCTCA---AGACGTGTGCCATGATCTCCAAGACGGCTGGTGGCATCGGTCTGAATGT 918453 Query 249147 CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTAT 249206 | ||| || || | || || ||||| || || || || | || || Sbjct 918452 CCATCGCATTCGTGCTACCGGCTCTTACATTGCCGGCACTAACGGCACATCCAACGGCAT 918393 Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCCG 249266 | | ||| | ||||| ||| | ||| ||| | | | | | |||| ||| | Sbjct 918392 CATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGCTACGTGGATCAGG-GTGGCAACA 918334 Query 249267 AAAGG---GGT-CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCC 249322 | || ||| | ||| ||| || ||||| |||||| |||||| | || ||||||| Sbjct 918333 AGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGATGTCTTTGAGTTCC 918274 Query 249323 TGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCC 249382 | ||| || |||||| | ||||| ||| | | || ||||| || ||| || | Sbjct 918273 TCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGATCTTTTCCTCGCAC 918214 Query 249383 TGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 | ||| || ||||| |||||||| || || || ||||||| |||||||| Sbjct 918213 TCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAGTGGACGCT 918159 >seq11 Length=5116797 Score = 120 bits (132), Expect = 7e-22 Identities = 273/408 (67%), Gaps = 22/408 (5%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| | || ||||| || || |||||||| || ||||||||||| Sbjct 3731566 CTTCCGCACATGCTCTTCTATGGCCCTCCTGGCACCGGCAAGACATCCACCATCCTGGCC 3731625 Query 254061 CTGGCC--CGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACG 254118 || ||| ||| |||| || | | ||||| | || ||||||||||| |||| Sbjct 3731626 CTCGCCAAGGAA--CTGTACGGTCCCGAGTTCATGAAGGCCCGTGTGCTCGAGCTCAACG 3731683 Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCC-----A 254172 | |||||||| ||||| | | | |||||||| ||| |||| |||||| || Sbjct 3731684 CCTCTGACGAGCGCGGCATCTCCATTGTCCGCGAAAAGGTCAAGGACTTTGCCCGCATGC 3731743 Query 254173 AGATGTCGATTTCGTCGTTC--CAACC----------CGGCTGTCCGCCTTTCAAGCTCG 254220 || | | | | | || | | ||| | ||| ||||| || |||||| Sbjct 3731744 AGCTCACAAATCCTCCGCCCGGCTACCGCGACCGCTACCCCTGCCCGCCCTTTAAGCTCA 3731803 Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280 | |||| |||||||| ||| ||||||| ||||| ||| |||||| ||||| || | Sbjct 3731804 TCGTCCTCGACGAGGCCGACTCCATGACCCAGGACGCCCAGAGCGCCCTGCGCCGCACCA 3731863 Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340 ||||||| || | | || || || || ||| | ||||| || || | |||| Sbjct 3731864 TGGAGACCTACAGCAAGATCACCCGCTTCTGTCTGATCTGCAATTATGTCACCCGCATCA 3731923 Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 ||| |||||| || || ||| |||||| || |||| | ||||| Sbjct 3731924 TCGACCCGCTCGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 3731971 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || ||||||| ||| | ||| || ||||| ||| | || | |||||| | | ||| Sbjct 2677795 ATGGCACATCGCGACTGCAGCGGCTCAATGATCTTGTTCGACTGGTTGCACGCAA--ATG 2677738 Query 115462 --AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAG 115519 ||||||||||| ||||||| | ||||| |||| ||||||||||| || || | Sbjct 2677737 CAAACCGCGTCGTATTCGAGTAGATCTCCATCGTCCGCCGCAGCGCCTGCTGCGCTCCCG 2677678 Query 115520 GTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| |||||||||||| || | ||||||||| Sbjct 2677677 ACGTCATGCTGTCTGCCTCGTCCAGGATGACAATCTT 2677641 >seq4 Length=1274338 Score = 104 bits (114), Expect = 5e-17 Identities = 184/266 (69%), Gaps = 18/266 (7%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| || |||| || || ||||||||||| || || || | |||||| Sbjct 893905 CTGCCCCATCTGCTGCTCTACGGACCGCCAGGAACAGGCAAAACCTCGACAGTGCTGGCG 893964 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 ||||||||| | | | ||| | |||| || | || ||||| ||||||||||| Sbjct 893965 CTGGCCCGACGCATCTATGGCACCGAGAACCTGCGGCAGATGGTGCTGGAGCTGAACGCG 894024 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT---CTCCAAGATG 254177 |||||||| || || | ||||| || ||||| |||||||||| || ||| | | | Sbjct 894025 TCTGACGACCGTGGCATTGACGTTGTGCGCGAGCAGATCAAGACGTTTGCCTCGACCAAG 894084 Query 254178 TCGAT-TTCGTCGTTCCA---------ACCCGGCTGTC---CGCC--TTTCAAGCTCGTG 254222 ||| || | || | || ||| ||| || |||| ||| || ||| | Sbjct 894085 CAGATCTTTGGCGGTGCAACATCTTCGACCTCGCTCTCTCTCGCCCGTTTTAAACTCATC 894144 Query 254223 ATCCTGGACGAGGCGGACACCATGAC 254248 ||||| |||||||| ||| ||||||| Sbjct 894145 ATCCTCGACGAGGCCGACGCCATGAC 894170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765808421824