Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq41 120 7e-22
seq11 120 7e-22
seq4 104 5e-17
>seq41
Length=3900177
Score = 120 bits (132), Expect = 7e-22
Identities = 424/655 (65%), Gaps = 13/655 (2%)
Strand=Plus/Minus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | || || | ||| | | ||||| ||||| || ||||||
Sbjct 918808 GCCATTGTCTACGACCGGGACTTCAACTACCAATACTTTGGCTTCAAGACCCTGGAGCGG 918749
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| || |||||||| | ||||| |||||||| || || ||||||||| | |||||
Sbjct 918748 TCCTACCTCCTCAAGCTCGATGGTAAGATCGTCGAGCGGCCGCAGCACATGATTATGCGC 918689
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970
||||| || || || ||||| | ||| | || ||||||| |||| | |||
Sbjct 918688 GTGGCCGTTGGTATCTGGGGCGATGATGTGGAGCGTGTTGTCGAGACATACAACTACATG 918629
Query 248971 AGTGAACGC-TGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAA 249029
|||| | | || |||||| | |||||||| ||||||||||| || | |
Sbjct 918628 TC-GAACAAGTTCTTTACGCATGCCTCGCCGACGCTTTTCAACGCCGGCACGCCCCAGGC 918570
Query 249030 TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGA 249089
||||||| ||| ||||| || | | |||| | || || | || ||||| || ||
Sbjct 918569 TCAGCTGTCCTCCTGCTTCCTCGTAGACATGAAGGATGATAGCATTGAGGGCATCTACGA 918510
Query 249090 CACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT 249146
|||||| | ||||| || | ||| || || || || || |||||||| ||
Sbjct 918509 CACGCTCA---AGACGTGTGCCATGATCTCCAAGACGGCTGGTGGCATCGGTCTGAATGT 918453
Query 249147 CTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTAT 249206
| ||| || || | || || ||||| || || || || | || ||
Sbjct 918452 CCATCGCATTCGTGCTACCGGCTCTTACATTGCCGGCACTAACGGCACATCCAACGGCAT 918393
Query 249207 CGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCCG 249266
| | ||| | ||||| ||| | ||| ||| | | | | | |||| ||| |
Sbjct 918392 CATCCCCATGCTTCGTGTCTTCAACAACACGGCCCGCTACGTGGATCAGG-GTGGCAACA 918334
Query 249267 AAAGG---GGT-CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCC 249322
| || ||| | ||| ||| || ||||| |||||| |||||| | || |||||||
Sbjct 918333 AGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGATGTCTTTGAGTTCC 918274
Query 249323 TGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCC 249382
| ||| || |||||| | ||||| ||| | | || ||||| || ||| || |
Sbjct 918273 TCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGATCTTTTCCTCGCAC 918214
Query 249383 TGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437
| ||| || ||||| |||||||| || || || ||||||| ||||||||
Sbjct 918213 TCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAGTGGACGCT 918159
>seq11
Length=5116797
Score = 120 bits (132), Expect = 7e-22
Identities = 273/408 (67%), Gaps = 22/408 (5%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
||||| || |||| ||| | || ||||| || || |||||||| || |||||||||||
Sbjct 3731566 CTTCCGCACATGCTCTTCTATGGCCCTCCTGGCACCGGCAAGACATCCACCATCCTGGCC 3731625
Query 254061 CTGGCC--CGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACG 254118
|| ||| ||| |||| || | | ||||| | || ||||||||||| ||||
Sbjct 3731626 CTCGCCAAGGAA--CTGTACGGTCCCGAGTTCATGAAGGCCCGTGTGCTCGAGCTCAACG 3731683
Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCC-----A 254172
| |||||||| ||||| | | | |||||||| ||| |||| |||||| ||
Sbjct 3731684 CCTCTGACGAGCGCGGCATCTCCATTGTCCGCGAAAAGGTCAAGGACTTTGCCCGCATGC 3731743
Query 254173 AGATGTCGATTTCGTCGTTC--CAACC----------CGGCTGTCCGCCTTTCAAGCTCG 254220
|| | | | | | || | | ||| | ||| ||||| || ||||||
Sbjct 3731744 AGCTCACAAATCCTCCGCCCGGCTACCGCGACCGCTACCCCTGCCCGCCCTTTAAGCTCA 3731803
Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280
| |||| |||||||| ||| ||||||| ||||| ||| |||||| ||||| || |
Sbjct 3731804 TCGTCCTCGACGAGGCCGACTCCATGACCCAGGACGCCCAGAGCGCCCTGCGCCGCACCA 3731863
Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340
||||||| || | | || || || || ||| | ||||| || || | ||||
Sbjct 3731864 TGGAGACCTACAGCAAGATCACCCGCTTCTGTCTGATCTGCAATTATGTCACCCGCATCA 3731923
Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388
||| |||||| || || ||| |||||| || |||| | |||||
Sbjct 3731924 TCGACCCGCTCGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 3731971
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/157 (73%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461
|| ||||||| ||| | ||| || ||||| ||| | || | |||||| | | |||
Sbjct 2677795 ATGGCACATCGCGACTGCAGCGGCTCAATGATCTTGTTCGACTGGTTGCACGCAA--ATG 2677738
Query 115462 --AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAG 115519
||||||||||| ||||||| | ||||| |||| ||||||||||| || || |
Sbjct 2677737 CAAACCGCGTCGTATTCGAGTAGATCTCCATCGTCCGCCGCAGCGCCTGCTGCGCTCCCG 2677678
Query 115520 GTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556
||||| |||||||||||| || | |||||||||
Sbjct 2677677 ACGTCATGCTGTCTGCCTCGTCCAGGATGACAATCTT 2677641
>seq4
Length=1274338
Score = 104 bits (114), Expect = 5e-17
Identities = 184/266 (69%), Gaps = 18/266 (7%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| || ||| |||| || |||| || || ||||||||||| || || || | ||||||
Sbjct 893905 CTGCCCCATCTGCTGCTCTACGGACCGCCAGGAACAGGCAAAACCTCGACAGTGCTGGCG 893964
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
||||||||| | | | ||| | |||| || | || ||||| |||||||||||
Sbjct 893965 CTGGCCCGACGCATCTATGGCACCGAGAACCTGCGGCAGATGGTGCTGGAGCTGAACGCG 894024
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT---CTCCAAGATG 254177
|||||||| || || | ||||| || ||||| |||||||||| || ||| | | |
Sbjct 894025 TCTGACGACCGTGGCATTGACGTTGTGCGCGAGCAGATCAAGACGTTTGCCTCGACCAAG 894084
Query 254178 TCGAT-TTCGTCGTTCCA---------ACCCGGCTGTC---CGCC--TTTCAAGCTCGTG 254222
||| || | || | || ||| ||| || |||| ||| || ||| |
Sbjct 894085 CAGATCTTTGGCGGTGCAACATCTTCGACCTCGCTCTCTCTCGCCCGTTTTAAACTCATC 894144
Query 254223 ATCCTGGACGAGGCGGACACCATGAC 254248
||||| |||||||| ||| |||||||
Sbjct 894145 ATCCTCGACGAGGCCGACGCCATGAC 894170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765808421824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |