Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq41 428 4e-115 seq22 125 6e-24 seq42 113 4e-20 seq11 104 2e-17 >seq41 Length=3900177 Score = 428 bits (474), Expect = 4e-115 Identities = 1247/1893 (66%), Gaps = 56/1893 (3%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 || || || ||||| || | | |||||| | | ||||| || || |||||||||||| Sbjct 916947 TCGACCGTGAACTGGATCGGCTGTGCGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTC 917006 Query 22169 TTCAGACCCATCTTCCA-CGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAA 22227 ||||| |||| |||||| | ||| || || || ||| | || || ||||| Sbjct 917007 TTCAGGCCCAGCTTCCAGCCCGTGAAG-TGCATGCTCGTGATCTTGCCCATGGTCGGCTC 917065 Query 22228 GTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 ||||| | || | |||||| ||| |||||||| || || || || || ||||| Sbjct 917066 ACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCCGCAGCCAT 917125 Query 22288 ATTTATCAAT-GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTA 22346 | | |||| || ||| || || ||||| || ||||||||||| | |||| ||| Sbjct 917126 CTGCA-CAATCGTCCGCTGAGAGATCTCCCACACCGTCTTGTACAGAGCCTTGATGTCTG 917184 Query 22347 ACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 ||| || | | || | |||||| || ||||| | | ||||| || || || Sbjct 917185 CCGGGAT-GTTGGGAATGTTCTGGATCGAACCGTTCTCGGCAATGATGCGGTTCTTCATG 917243 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 | || ||||| ||| ||| || || || |||| ||| |||| ||||| || Sbjct 917244 TTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACCACCTGG 917303 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 ||||| |||| || || || || |||||||||||||||| |||| ||||| | || Sbjct 917304 AACTCACCGGCCAGCACACGCCGCGAGTAAATGTTGGATGTGTACGGCTCGAAGCACTCG 917363 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| ||||| ||||| | ||||| || |||||||||||||||| ||| || ||| Sbjct 917364 TTGTTGCCCAGAATCTGTGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGACTGTTG 917423 Query 22586 CTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC---ATCGA---CCAGTCCCACAGAT 22637 | || ||||||| |||| |||| ||| | ||| ||| |||||||| | Sbjct 917424 CGCACACCGTGCTCCTTGA--------TCTTCAGCCGCAGCGAGTCCCAATCCCACAGGT 917475 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCT 22695 | || ||||| |||| ||||||| ||| |||| | || | ||||| | | | Sbjct 917476 CCGATGGCGTGACAT---CCCACATGTCGGGCTGCAGAATACCCTGCGACACAGGAGAC- 917531 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGC 22755 || || || || | ||| | || | ||| ||| || ||||| | || || ||| Sbjct 917532 -CCCTCATATGTCTGGTAGGTGCCCTCAATCTTGGCCAGCTCGCACGACTCCGTCAGCGC 917590 Query 22756 GCCGTAATATATAGTCTCGAAGATTTTCTTGTTCA--ATTCG-GCGGCGGCGACGCTTTC 22812 ||| || || ||||| |||| | |||||||| | || || ||| || || | Sbjct 917591 CGCGTGGTAGATGGTCTCAAAGACCTGCTTGTTCAGCAGGCGTGCCTCGG-GAGACT--C 917647 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | ||||| |||| | || ||| |||||||||| |||||| || || | ||| || || Sbjct 917648 AAAGGGCATGCGCAGCGCCAGGAAGGCGTCCGCCAGACCCTGCACACCCAGACCAATGGG 917707 Query 22873 TCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGATT 22930 |||| || || || || ||| || |||| ||| || | || ||| || Sbjct 917708 ACGGTGGCGCATGTT--ACTGTTCCGTGCTTCTGGCACAGGGTAGTAGTTGACATCAATG 917765 Query 22931 GTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA 22990 | | ||||| ||| | | || | | ||| | | ||||| || Sbjct 917766 ATGCGGTTCAGGTTGCGGACAACCAGCTGCGTGACATCGTGCAGTCTCTGGAAGTCATAC 917825 Query 22991 -ACGCCCGATTGTA--CAAC-AAACTTGTTGACG-GCGATCGAGGCAAGATTGCATACGG 23045 || | || || | || ||| | || | || | ||||| | ||||| || | Sbjct 917826 GACTCGTTGTTATAGTCGACGAAAGACG--GAAGAGCCAAAGAGGCCAAGTTGCACACAG 917883 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT---GCTACACTTTA 23102 |||||||||| | || |||||| ||||| || || || | || ||| | | Sbjct 917884 CCACCTCGTCCGGAGCCGAGTACTCGACAATCTCCGTGCACAAGTTCGAGCTGCGG---A 917940 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 | || |||| || |||||||||| || || ||||| ||||||||||||||| | | Sbjct 917941 TGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGG 918000 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC 23222 | |||||||||| ||||| ||| | || || ||||| |||| || | | | Sbjct 918001 GGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCATACCACAGCTTCTGGGCCTTGAT-C 918059 Query 23223 GTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281 || || | | || || |||||| || | ||||| || ||||| || | ||| Sbjct 918060 TTCTTGCGACCGCGACCCTCGCGCTCGTATTTCTCGTACAGAGCCTCAAACTCCTCGCCG 918119 Query 23282 TAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT 23341 || || || |||||||||| ||| | || ||||| || ||||| || || Sbjct 918120 TAGCAATCAGCCAGGCCGGCGCATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTC 918179 Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || || |||| || || || || ||||| || ||| ||| || || ||||| || Sbjct 918180 TCCACACGCTTCATGAACAGGTCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGG 918239 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||||| ||||| |||||| || || | || || || || || ||||||||| Sbjct 918240 ACCTCCTCCTTGCCTTGGTTCTTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCAC 918299 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 ||||| | ||| | | || || || || | ||| ||||| |||||||| ||||| ||| Sbjct 918300 GGCTCCAAGTAGATGCAGAATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGG 918359 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 |||||||||||| | || | ||||| || | || |||||||| | |||| ||| Sbjct 918360 GCCGTGTTGTTGAAGACACGAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCG 918419 Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 || | || || | || |||| | || || | | ||| ||||| || ||| Sbjct 918420 GCAATGTAAGAGCCGGTAGCACGAATGCGATGGACATTCAGACCGATGCCACCAGCCGTC 918479 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || ||||| || || || || ||||||||||||||||| ||||| || || || Sbjct 918480 TTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTC 918539 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | | || | ||| || || |||| || || | |||||| |||| ||| || ||| Sbjct 918540 ATGTCTACGAGGAAGCAGGAGGACAGCTGAGCCTGGGGCGTGCCGGCGTTGAAAAGCGTC 918599 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCGATGGCGGCATC 23820 || ||| ||||||||| | |||||||| ||| ||||| || |||| | || Sbjct 918600 GGCGAGGCATGCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTC 918658 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 | || || || ||||| | ||| |||||||| ||||||| || || | |||||| Sbjct 918659 CACATCATCGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGAC 918718 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | || | | |||| || || || || | || || || || ||||| || | Sbjct 918719 GATCTTACCATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTG 918778 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| ||||| || |||| || |||||||| Sbjct 918779 GTAGTTGAAGTCCCGGTCGTAGACAATGGCCGA 918811 >seq22 Length=1908885 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || || ||||| || | || || ||| | || Sbjct 662657 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACGCTGGAAGTGGAATCTTCG 662598 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | ||||| |||||| Sbjct 662597 GACACAATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCGCCTGACCAG 662538 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||||||||||| ||| || || || ||| Sbjct 662537 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGGACGCTGTCGGACTACAAC 662478 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || | ||| | ||||| Sbjct 662477 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 662431 Score = 111 bits (122), Expect = 1e-19 Identities = 124/163 (76%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 1643952 CAACCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 1644011 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGC 31304 ||||||||| | |||| | ||||| ||| || | | ||||||||| ||| | || | Sbjct 1644012 CGTCCGACACTATCGACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCCC 1644068 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | ||||||||||| || || ||||| ||||| ||| |||| || Sbjct 1644069 CAGACCAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGA 1644111 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| || ||||| |||| || || ||||| Sbjct 663113 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 663054 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | ||||| |||||| Sbjct 663053 GACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 662994 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || |||||||| ||| | || || || | ||| || ||| Sbjct 662993 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAAC 662934 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || ||||| || | ||| | || |||| Sbjct 662933 ATCCAGAAGGAGTCTACTCTCCACCTGGTTCTCCGCCTGCGTGGTGGTA 662885 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 663342 CATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTC 663283 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | ||||| | || ||||||||| ||| | ||||| ||||| Sbjct 663282 CGATACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCA 663223 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| |||||||| ||| | || | ||| || || Sbjct 663222 GCAGCGCCTGATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAA 663163 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 663162 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 663130 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || ||||| ||||| || | || ||||| |||| Sbjct 662885 ATGCAAATCTTTGTCAAGACACTCACCGGCAAGACGATTACGTTGGAAGTTGAGTCGTCT 662826 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||| || | || ||||||||| Sbjct 662825 GACACAATCGACAACGTAAAGTCGAAGATCCAAGACAAGGAGGGTATCCCTCCCGACCAG 662766 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| |||| ||| ||| || || || ||| Sbjct 662765 CAGCGCCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGGACACTGTCTGACTACAAC 662706 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || |||| || | ||| | || |||| Sbjct 662705 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGTA 662657 >seq42 Length=705881 Score = 113 bits (124), Expect = 4e-20 Identities = 232/345 (67%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || || || | || | || ||||| ||||| || || || ||||| ||| Sbjct 321814 CCACCTTTGCGCAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCG 321755 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| | | || || ||| | ||||| || ||||||||||| || ||||| || || Sbjct 321754 CCTTCTCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCA 321695 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 | ||| |||| || ||||||||||| || || || || ||||| ||||| ||| ||| | Sbjct 321694 ATGAGCTGATTTCCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCC 321635 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 || | ||| |||| | | ||| ||||||||| ||| || ||| || Sbjct 321634 ACCTGAACAACCGCCCGAGCAAGCAGATGATCCAGGACATTATTGTCGATGCTGTCAAGA 321575 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATT 58257 | || | ||||| | || || || || ||| || |||| || |||||| Sbjct 321574 TTGAGCAGGAGTTCCTGACGGAGGCTCTGCCGTGTGCTCTGCTGGGCATGAACTCCACCC 321515 Query 58258 TGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 | ||| ||||||||||||||||||||||| | || || ||| Sbjct 321514 TCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCG 321470 >seq11 Length=5116797 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| || || ||||| || |||||| |||| || || | || |||| | Sbjct 2814964 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2814905 Query 31261 CGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCG 31317 ||| | ||||| ||| || | | ||||||||| ||| | ||||| ||||||||||| Sbjct 2814904 CGACAATGTCAA---GAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCG 2814848 Query 31318 TCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCA 31377 ||| || || |||||||| ||| | || || ||| || ||| || ||||| || Sbjct 2814847 TCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCA 2814788 Query 31378 AAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||| || | ||| | || |||| Sbjct 2814787 GAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGCGTGGTGGTA 2814744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766160400560