Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq41 150 2e-31
>seq41
Length=3900177
Score = 150 bits (166), Expect = 2e-31
Identities = 455/687 (66%), Gaps = 28/687 (4%)
Strand=Plus/Plus
Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077
||||| | || ||||||| || |||||| |||| | || ||| || ||||| || ||
Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200
Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137
|| || ||||| || || | || | ||| | || | ||||| || ||| |||
Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260
Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197
|| || ||||||||| | | | ||| ||||||||| |||||||| ||| || |
Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318
Query 66198 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255
| | || ||||| ||||| || |||||||| | ||| | || ||||| || | || |
Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378
Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315
| ||| || || || || |||||||| || || || |||| || || || | |
Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438
Query 66316 CACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 66371
||||||| || || ||| | |||| || || || ||| | || ||||| | ||
Sbjct 918439 CACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCA 918494
Query 66372 CATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 66430
|| ||| || | ||| || ||||||||||| || ||||||||| |||||| | || ||
Sbjct 918495 CA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAA 918553
Query 66431 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486
||| |||| | ||| | || || || || || || | || || || || |
Sbjct 918554 GCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCAT 918609
Query 66487 GCGTAAACCA-TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545
||||||| | || ||| | |||| ||||| ||||| | | | || | || |||
Sbjct 918610 GCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CAT 918666
Query 66546 TG--ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603
| || || || || || ||||| | ||||||||| || | || ||||||||
Sbjct 918667 CGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTAC 918726
Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663
| | || | | |||||| |||| || || || ||||| || | ||| |
Sbjct 918727 CATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGA 918786
Query 66664 AGTCTCGTTCGTAAATAATAACCGAGT 66690
|||| || ||||| | ||| ||||||
Sbjct 918787 AGTCCCGGTCGTAGACAATGGCCGAGT 918813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172446232120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |