Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq22 91.5 1e-13
>seq22
Length=1908885
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || ||||| | ||| ||||| || || ||||| || || |
Sbjct 662659 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAC 662718
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| | ||| || ||||| || || || | ||||| || ||||| ||||||||
Sbjct 662719 AGTGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGG 662778
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || |||| | || | |||||| | | ||| ||
Sbjct 662779 ATACCCTCCTTGTCTTGGATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACT 662838
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|| | || | |||||||||||| | || || || || |||||||||
Sbjct 662839 TCCAACGTAATCGTCTTGCCGGTGAGTGTCTTGACAAAGATTTGCATA 662886
Score = 87.8 bits (96), Expect = 2e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| | ||| | |||||||| || || ||||| || ||| | |||| || ||
Sbjct 662904 AACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTC 662963
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|||||| || |||||| ||||||| || ||||| || || || ||||| || ||||| |
Sbjct 662964 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-T 663022
Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733
|| | || | || | | || | ||||||| | ||| ||||| | || | ||||
Sbjct 663023 GAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCT 663082
Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||| | || || || || |||||||||
Sbjct 663083 TGCCGGTGAGTGTCTTGACAAAGATTTGCATA 663114
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||| | |||| ||| || | ||| || |||
Sbjct 663145 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 663204
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| || ||||| || || || ||||| || ||||| ||| | || | ||
Sbjct 663205 GCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGACTT 663263
Query 139688 AGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || || | |||| | ||| ||||||| ||| | ||||||||||| | |||
Sbjct 663264 GACGTTGTCAATGGTATCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGCGT 663323
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 663324 CTTGACGAAGATCTGCAT 663341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063733365600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |