Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq41 159 5e-34
>seq41
Length=3900177
Score = 159 bits (176), Expect = 5e-34
Identities = 457/687 (67%), Gaps = 28/687 (4%)
Strand=Plus/Plus
Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGA 79956
||||||| || ||||||| || |||||| || | | || || || ||||| || ||
Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200
Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016
|| || ||||| || || | || ||||| | || | |||||| || ||| |||
Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260
Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076
|| || ||||||||| | | | ||| | ||||||||| |||||||| ||| || |
Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318
Query 80077 A--CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134
| | || || || ||||| || |||||||| | ||| | || ||||| || | || |
Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378
Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194
| ||| || || || || |||||||| || || || |||| || || || | |
Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438
Query 80195 CACGAAT---ATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250
||||||| || || ||| | |||| || || || ||| | || ||||| | ||
Sbjct 918439 CACGAATGCGATGGAC--ATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCA 918494
Query 80251 CATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309
|| ||| || | ||| || ||||||||||| ||||||||||| |||||| | || ||
Sbjct 918495 CA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAA 918553
Query 80310 ACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365
||| |||| | ||| | || || || || || || | || || || || |
Sbjct 918554 GCAGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCAT 918609
Query 80366 GCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 80424
||||||| | || | |||| |||| ||||| ||||| | | | || | || |||
Sbjct 918610 GCGTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CAT 918666
Query 80425 TG--ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482
| || || || || || ||||| | ||||||||| || | || ||||||||
Sbjct 918667 CGCCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTAC 918726
Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542
|| | || | | ||| || |||| || || || ||||| || | ||| |
Sbjct 918727 CATCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGA 918786
Query 80543 AGTCTCGTTCGTAAATAATAACCGAGT 80569
|||| || ||||| | ||| ||||||
Sbjct 918787 AGTCCCGGTCGTAGACAATGGCCGAGT 918813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268413930520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |