Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq41 149 8e-31 >seq41 Length=3900177 Score = 149 bits (164), Expect = 8e-31 Identities = 451/683 (66%), Gaps = 24/683 (4%) Strand=Plus/Plus Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 ||||| || || ||||||| | |||||| || | | | || || ||||| || || Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 || || ||||| || || | || ||||| | || | |||||| || ||| ||| Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || || ||||||||| | | | ||| | ||||||||| |||||||| ||| || | Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318 Query 72160 A--CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | | || ||||| ||||| || |||||||| | ||| | || ||||| || | || | Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 | ||| || || || || ||||||| || || || |||| || || || | | Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438 Query 72278 CACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 ||||||| || ||| | |||| || || || ||| | || ||||| | || || Sbjct 918439 CACGAATGCGATGGACATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCACA 918496 Query 72336 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 ||| || | ||| || ||||||||||| || ||||||||| |||||| | || || | Sbjct 918497 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGC 918555 Query 72395 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || |||| | ||| | || || || || || || | || || || || ||| Sbjct 918556 AGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGC 918611 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 ||||| | || | |||| |||| ||||| ||||| | | | || | || ||| | Sbjct 918612 GTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CATCG 918668 Query 72510 --ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567 || || || || || ||||| | ||| ||||| || | || |||||||| | Sbjct 918669 CCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCA 918728 Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 | | || | | |||||| |||| || || || ||||| || | ||| ||| Sbjct 918729 TCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 918788 Query 72628 TCTCGTTCGTAAATAATAACCGA 72650 || || ||||| | ||| |||| Sbjct 918789 TCCCGGTCGTAGACAATGGCCGA 918811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138839262680