Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq41 149 8e-31
>seq41
Length=3900177
Score = 149 bits (164), Expect = 8e-31
Identities = 451/683 (66%), Gaps = 24/683 (4%)
Strand=Plus/Plus
Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039
||||| || || ||||||| | |||||| || | | | || || ||||| || ||
Sbjct 918141 CATTCGTTGGGGCACATCAGCGTCCACTCGCCGTTCTTCTCCACACGCTTCATGAACAGG 918200
Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
|| || ||||| || || | || ||||| | || | |||||| || ||| |||
Sbjct 918201 TCGGGGATCCAGAGTGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTGCCTTGGTTC 918260
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
|| || ||||||||| | | | ||| | ||||||||| |||||||| ||| || |
Sbjct 918261 TTCCGCAGGTCGAGGAACTCAAAGACATCGGCATGCCACGGCTCCAAGTAGATG--CAGA 918318
Query 72160 A--CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217
| | || ||||| ||||| || |||||||| | ||| | || ||||| || | || |
Sbjct 918319 ATGCACCGGGCCGCTTGTTGCCACCCTGATCCACGTAGCGGGCCGTGTTGTTGAAGACAC 918378
Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277
| ||| || || || || ||||||| || || || |||| || || || | |
Sbjct 918379 GAAGCATGGGGATGATGCCGTTGGATGTGCCGTTAGTGCCGGCAATGTAAGAGCCGGTAG 918438
Query 72278 CACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335
||||||| || ||| | |||| || || || ||| | || ||||| | || ||
Sbjct 918439 CACGAATGCGATGGACATTCA--GACCGATGCCACCAGCCGTCTTGGAGATCATGGCACA 918496
Query 72336 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394
||| || | ||| || ||||||||||| || ||||||||| |||||| | || || |
Sbjct 918497 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTATCATCCTTCATGTCTACGAGGAAGC 918555
Query 72395 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| |||| | ||| | || || || || || || | || || || || |||
Sbjct 918556 AGGAGGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAAAGCGTCGGCGAGGCATGC 918611
Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509
||||| | || | |||| |||| ||||| ||||| | | | || | || ||| |
Sbjct 918612 GTAAAGAACTTGTTCGACATGTAG-TTGTATGTCTCGACAACACGCTCCACAT--CATCG 918668
Query 72510 --ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567
|| || || || || ||||| | ||| ||||| || | || |||||||| |
Sbjct 918669 CCCCAGATACCAACGGCCACGCGCATAATCATGTGCTGCGGCCGCTCGACGATCTTACCA 918728
Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627
| | || | | |||||| |||| || || || ||||| || | ||| |||
Sbjct 918729 TCGAGCTTGAGGAGGTAGGACCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAG 918788
Query 72628 TCTCGTTCGTAAATAATAACCGA 72650
|| || ||||| | ||| ||||
Sbjct 918789 TCCCGGTCGTAGACAATGGCCGA 918811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138839262680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |