Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq41 176 7e-39 seq42 147 3e-30 >seq41 Length=3900177 Score = 176 bits (194), Expect = 7e-39 Identities = 326/473 (69%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || ||||| || || | | |||||||||| || ||||| || || Sbjct 918346 CAGGGTGGCAACAAGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGAT 918287 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| |||| || ||| ||| || |||| || ||| | || Sbjct 918286 GTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGAT 918227 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || ||||||||| | || || ||||||||||||| || | | ||| | Sbjct 918226 CTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAG 918167 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || | |||| ||| | ||||||| ||||| |||||| Sbjct 918166 TGGACGCTGATGTGCCCCAACGAATGCGCCGGCCTGGCTGATTGCTACGGCGAGGAGTTT 918107 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| | ||||||| ||||| || || ||| || || | || | Sbjct 918106 GAGGCTCTGTACGAGAAATACGAGCGCGAGGGTCGCGGTCGCAAGAAGA-TCAAGGC-CC 918049 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | ||||| || ||| ||| ||||| || | || | ||| |||| Sbjct 918048 AGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTCT 917989 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| |||||||| || |||| |||||| |||| | Sbjct 917988 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAGCTCGA 917929 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | |||||||||| ||||| |||||| | ||||||||||| ||| || ||| Sbjct 917928 ACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGC 917876 >seq42 Length=705881 Score = 147 bits (162), Expect = 3e-30 Identities = 213/294 (72%), Gaps = 14/294 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||| |||| ||||| ||||||| ||| ||| | |||||| Sbjct 322262 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATCTG 322203 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||||||| |||| ||| | | || ||| || ||||| || || || Sbjct 322202 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGTTTCTTCATCTCC 322143 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | |||||||| || | ||| ||||| ||||||||||| || || || || || Sbjct 322142 CACATTCTCGCCTTCTTCGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGA-GCG 322084 Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAAT 125251 ||| || | ||| ||| | || |||| ||| ||||| || || ||||| || Sbjct 322083 CTTC-----AGCGCTGAGGTCCAGGTGCCTGAGG-CTCGCTGCTTCTATGGCTTCCAGAT 322030 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| |||||| | |||||||| | ||||||| || ||||||| ||||| Sbjct 322029 CATGATGGAGAACATCCACTCGGAGACGTACTCTCTGCTCATTGACACCTACAT 321976 Score = 123 bits (136), Expect = 4e-23 Identities = 336/503 (67%), Gaps = 25/503 (5%) Strand=Plus/Minus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| | || ||||| | |||| | |||| | | || Sbjct 321863 ATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTCCACCTTTGCG 321804 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || ||||||||||| ||||| |||||||| ||||| || || | || Sbjct 321803 CAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCC 321744 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || || ||||| || ||||| | || ||| | || Sbjct 321743 ATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATT 321684 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598 || || |||||||| || ||| ||||||||| || ||||| || || || | | | Sbjct 321683 TCCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAAC 321624 Query 125599 GTCCCGAG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAG 125656 |||||| |||||| ||| ||| ||| ||||| |||||| || | Sbjct 321623 CGCCCGAGCAAGCAGAT-----GAT--CCAGGACAT---TATTGT---CGATGCTGTCAA 321577 Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCA 125715 ||| || || ||||| || || || | || || || || || | |||||||||| || Sbjct 321576 GATTGAGCAGGAGTTCCTGACGGAGGCTCTGCC-GTGTGCTCTGCTGGGCATGAACTCCA 321518 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC- 125774 || ||| ||||||| |||||||| || || ||||| ||| || | ||| Sbjct 321517 CCCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCG---CCCTCGGCA 321461 Query 125775 -CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || |||| | ||| ||| || ||||| || || ||| | ||| || || | | Sbjct 321460 ACGACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTG 321401 Query 125833 GTAAGACCAACTTTTTCGAGAAG 125855 | ||||||||||| || |||||| Sbjct 321400 GCAAGACCAACTTCTTTGAGAAG 321378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058801680680