Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq41 176 7e-39
seq42 147 3e-30
>seq41
Length=3900177
Score = 176 bits (194), Expect = 7e-39
Identities = 326/473 (69%), Gaps = 4/473 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || ||||| || || | | |||||||||| || ||||| || ||
Sbjct 918346 CAGGGTGGCAACAAGCGGCCCGGTGCATTCTGCATCTACTTGGAGCCGTGGCATGCCGAT 918287
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || |||| |||| || ||| ||| || |||| || ||| | ||
Sbjct 918286 GTCTTTGAGTTCCTCGACCTGCGGAAGAACCAAGGCAAGGAGGAGGTCCGTGCCCGTGAT 918227
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || ||||||||| | || || ||||||||||||| || | | ||| |
Sbjct 918226 CTTTTCCTCGCACTCTGGATCCCCGACCTGTTCATGAAGCGTGTGGAGAAGAACGGCGAG 918167
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || | |||| ||| | ||||||| ||||| ||||||
Sbjct 918166 TGGACGCTGATGTGCCCCAACGAATGCGCCGGCCTGGCTGATTGCTACGGCGAGGAGTTT 918107
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
||||| |||| | ||||||| ||||| || || ||| || || | || |
Sbjct 918106 GAGGCTCTGTACGAGAAATACGAGCGCGAGGGTCGCGGTCGCAAGAAGA-TCAAGGC-CC 918049
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | ||||| || ||| ||| ||||| || | || | ||| ||||
Sbjct 918048 AGAAGCTGTGGTATGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCCTTCATGCTCT 917989
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
||||||| | || ||||| |||||||| || |||| |||||| |||| |
Sbjct 917988 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAGCTCGA 917929
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
| |||||||||| ||||| |||||| | ||||||||||| ||| || |||
Sbjct 917928 ACTTGTGCACGGAGATTGTCGAGTACTCGGCTCCGGACGAGGTGGCTGTGTGC 917876
>seq42
Length=705881
Score = 147 bits (162), Expect = 3e-30
Identities = 213/294 (72%), Gaps = 14/294 (5%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||| |||| ||||| ||||||| ||| ||| | ||||||
Sbjct 322262 ATCTGGCAGATGTACAAGAAGCACGAGGCTTCCTTCTGGACGGCCGAGGAGATTGATCTG 322203
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||||||| |||| ||| | | || ||| || ||||| || || ||
Sbjct 322202 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGTTTCTTCATCTCC 322143
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
|||||| | |||||||| || | ||| ||||| ||||||||||| || || || || ||
Sbjct 322142 CACATTCTCGCCTTCTTCGCTGCCTCTGATGGCATCGTCAACGAGAACCTCGTCGA-GCG 322084
Query 125198 ATTCTCTCAAGAGTTGA---CCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAAT 125251
||| || | ||| ||| | || |||| ||| ||||| || || ||||| ||
Sbjct 322083 CTTC-----AGCGCTGAGGTCCAGGTGCCTGAGG-CTCGCTGCTTCTATGGCTTCCAGAT 322030
Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|||||| |||||| | |||||||| | ||||||| || ||||||| |||||
Sbjct 322029 CATGATGGAGAACATCCACTCGGAGACGTACTCTCTGCTCATTGACACCTACAT 321976
Score = 123 bits (136), Expect = 4e-23
Identities = 336/503 (67%), Gaps = 25/503 (5%)
Strand=Plus/Minus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || ||||| | |||| | || ||||| | |||| | |||| | | ||
Sbjct 321863 ATCCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATTGCTGACAAGGAGTCCACCTTTGCG 321804
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | || ||||||||||| ||||| |||||||| ||||| || || | ||
Sbjct 321803 CAGCGCCTCGTGGCATTCGCTGCCGTTGAGGGCATTTTCTTCAGCGGCGCCTTCTCTTCC 321744
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| |||||||||||||| || || ||||| || ||||| | || ||| | ||
Sbjct 321743 ATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATT 321684
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598
|| || |||||||| || ||| ||||||||| || ||||| || || || | | |
Sbjct 321683 TCCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAAC 321624
Query 125599 GTCCCGAG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAG 125656
|||||| |||||| ||| ||| ||| ||||| |||||| || |
Sbjct 321623 CGCCCGAGCAAGCAGAT-----GAT--CCAGGACAT---TATTGT---CGATGCTGTCAA 321577
Query 125657 GATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCA 125715
||| || || ||||| || || || | || || || || || | |||||||||| ||
Sbjct 321576 GATTGAGCAGGAGTTCCTGACGGAGGCTCTGCC-GTGTGCTCTGCTGGGCATGAACTCCA 321518
Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC- 125774
|| ||| ||||||| |||||||| || || ||||| ||| || | |||
Sbjct 321517 CCCTCATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCG---CCCTCGGCA 321461
Query 125775 -CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832
|| |||| | ||| ||| || ||||| || || ||| | ||| || || | |
Sbjct 321460 ACGACAAGGTGTACCGTTCCACCAACCCCTTCGACTTTATGGAGAACATCTCCCTGGGTG 321401
Query 125833 GTAAGACCAACTTTTTCGAGAAG 125855
| ||||||||||| || ||||||
Sbjct 321400 GCAAGACCAACTTCTTTGAGAAG 321378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058801680680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |