Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercus-
mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq22 91.5 1e-13
>seq22
Length=1908885
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||||| ||| |||||||| || || ||||| || | || ||| | |||||||
Sbjct 662676 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGACAGTGTCCGGCCGTCCTC 662735
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||| || ||||| |||| || | |||||| || || | ||||| |||||
Sbjct 662736 CAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCTTG 662795
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| ||||| | | ||| || || | ||| ||| | ||||| || ||
Sbjct 662796 GATCTTCGACTTTACGTTGTCGATTGTGTCAGACGACTCAACTTCCAACGTAATCGTCTT 662855
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || |||||||| ||||||||
Sbjct 662856 GCCGGTGAGTGTCTTGACAAAGATTTGCAT 662885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414572582737942
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |