Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercus- mongolicae_20[genbank_20GCA_5F002215975.1_202017-07-07] 43 sequences; 27,005,990 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq40 120 3e-22 >seq40 Length=2234633 Score = 120 bits (132), Expect = 3e-22 Identities = 193/270 (71%), Gaps = 13/270 (5%) Strand=Plus/Plus Query 99506 CCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTCC-GCACGGTGAGCGAGGTGTTG 99564 ||||||| || |||| |||||||||| || | || || |||| || ||| || ||| Sbjct 464577 CCCAGCCGTGGTTGGCATGCGAGCCCG-CGTCGTGCGCCCGCACCGTCAGCACCGTATTG 464635 Query 99565 AGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGGCAGCCGTGCTGCGGCCGCGGG 99621 |||| |||||||||||| ||||| ||| || ||||| || | | |||| |||| Sbjct 464636 AGCATCAGCACGCCGCGCTCGGCCCACGGCGTCAGCAGGCCACCCTTGTTCGGCGGCGGC 464695 Query 99622 GTCCCG------GGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGG 99675 | | | ||| ||| |||| | || |||| ||||| | || ||||| Sbjct 464696 GGCTGGAAAGTCGGGTAGTCGTTCTTGAGCGCAACGTACATGTTGCGCAGCGATGGCGGC 464755 Query 99676 ATCGGAACGCCGCGG-TTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTA 99734 ||| | | |||| || || ||| || |||||||||||||| |||||| ||||||| Sbjct 464756 GGCGGGATGG-GCGGCTTGACCGAGAAAGCAAGGCCGTGGGCCTGGCCGTGGTTGTGGTA 464814 Query 99735 GGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 |||||||||||| || |||||||||||||| Sbjct 464815 GGGGTCCTGGCCGAGAATGACGACCTTGAC 464844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440898963016680